Chr:
Chr7
Start:
5365362
End:
5382475
Strand:
+
Ref_name:
LOC107281496
Sequence
(XR_001547277.2):
GGGGUCUUUGGGCCAAAUUUUAGGGUAGUCCCGAGCCCACCGGGACUACCAGCUAGCUACGCCCCUGCGGCUGCGUGUGCCAUGCGAUGCUCUGUCGUGGCUGUCAUCUGUCCGUCCGCUUGCCAACCCGAUAUGCUUGCCCUCUCCACCACACAUCACACACCCAUCAAUCCUCAAUUCAUCUGCUUGCCCUCUACAGCACACACCCAUCAAUUCUCAAUUUAUGAAAAGAAAUCCCUAAUCCAUCGGAGAAAUCGACGCCAACCCCUCCGCCCCAUCGAUCACCAGUUCGCCGACGACUGCCUUUCUCUUCCCCGACCUGCGUUCUUCCCCACCCACCGCCUGUGAUUGUAGGGUUGCCCCGUGGUGGUUGUCGCUGGUUAUAGUCGUCGUCCAGCUAUCUCUAUUGGUCAGGCUGCCGGCGCACUGGCCGCACCCAUCAAGGCUCCCGAUUGUUGCCCUGGUCGAGCGGCUGCCAUCUGCCAGCACGUCCGCUCCGGACAGCUGACUUCAUCCUCGGUUUUCUUCGUCUCAUCCGAUGGUGCUUGCAAUUUCCGACGACGUGGCUCAUUCUUCUUUCAAGCAGCUUGCUGCUUUCACCUAUCUAGAAUCCUUAUGGUCAGAGGUAACACAAGCUUUGGCUACCAUCCCUGGGCAACACUCAGCUGAUAGGCCUGAUAUUAUUAAUCAUGUAUUCCAUGUUAAGCUGCACCUCUUCAUGAACGACAUCGUAAAGAAGAAAUUUUUUUGGCCCUGUCACUACAGUUGUGUACACAAUUGAAUUUCAGAAGCAUGGACUUCCACAUGUUCACAUCAUAUCGUGGUUAGAUAAGAGUGGUCCAUUGACACUUGCUGAUAUUGACAGACUAAUAUCGGCACAGCUUCCAGAUCCAUCCAUUGAUCGAGUUGGUUAUGACGCUGUUGCGGCAUUCAUGAUGCAUGGACCUUGUGGUGAUGCAAAUCCAUAUUGUUCAUGCAUGGUUGACAGUAAAUGCUCAAAGAAUUACCCAAAGGAAUAUUGUGAUAAAACAACAAUCCUGCCAAAUGGCCAUGUAAGGUAUGCUCGGCCAAAAAAAUGAUAUAAUUGUUGCCAAAAAUGAAAUUUCUCUUGAUAAUCGGCAUGUUGUCCCCCACAAUAUCGAUUUAUUAGUCAAAUAUGAGGCGCAUGUCAAUAUGGAAAGAGAUAAUCGUGAUGGAAUGGAAAAGUAUCUAUUCAAAUA
Sequence
(XR_001547275.2):
CCGGCCGAACCGGCAAAGGGGGGCCUGCGCGGUCUCCCGGUGAGGAGCCCCACGCUCUGUCAGCUACGAAUAAAUCUACAAAAGUUUUACUUAUAAAUUAAUUUUAAUUUUCUAAUAAGCCAAAUAAGCCAUUUUAAACAAAAUGGCAACCGAUGAGAGCCUUAAAUAUCCUAGACAUGUGAGUUCUCAAAGAUGGAGUAUUUGUGACCUUUUGUCUCGAAGCCUCCAGAUUGACCCAAUGGAUUCUAUUCUCAUAUAUUGAUCCAACGGUCCUUUUGUUUUACCAGUCUCAUCCGAUGGUGCUUGCAAUUUCCGACGACGUGGCUCAUUCUUCUUUCAAGCAGCUUGCUGCUUUCACCUAUCUAGAAUCCUUAUGGUCAGAGGUAACACAAGCUUUGGCUACCAUCCCUGGGCAACACUCAGCUGAUAGGCCUGAUAUUAUUAAUCAUGUAUUCCAUGUUAAGCUGCACCUCUUCAUGAACGACAUCGUAAAGAAGAAAUUUUUUUGGCCCUGUCACUACAGUUGUGUACACAAUUGAAUUUCAGAAGCAUGGACUUCCACAUGUUCACAUCAUAUCGUGGUUAGAUAAGAGUGGUCCAUUGACACUUGCUGAUAUUGACAGACUAAUAUCGGCACAGCUUCCAGAUCCAUCCAUUGAUCGAGUUGGUUAUGACGCUGUUGCGGCAUUCAUGAUGCAUGGACCUUGUGGUGAUGCAAAUCCAUAUUGUUCAUGCAUGGUUGACAGUAAAUGCUCAAAGAAUUACCCAAAGGAAUAUUGUGAUAAAACAACAAUCCUGCCAAAUGGCCAUGUAAGGUAUGCUCGGCCAAAAAAAUGAUAUAAUUGUUGCCAAAAAUGAAAUUUCUCUUGAUAAUCGGCAUGUUGUCCCCCACAAUAUCGAUUUAUUAGUCAAAUAUGAGGCGCAUGUCAAUAUGGAAAGAGAUAAUCGUGAUGGAAUGGAAAAGUAUCUAUUCAAAUA
Sequence
(XR_001547276.2):
UUUGAAGCUGACGUUUGGGUCACCGGUUAAAAAUGCAAAAUUUGGUAAUAAAACCCGGUCAAAAGUUUUUUUUUAAAAAAAAACUGCUAAUAGCUAGUAAUUUACAAUUUGGGAAAUAAAACCUGACAUAAAGUACAGUAUACUUUAAAAUUUUCGAAUAAGAUGAAUACCAAACAAUUAAUGGGACCGUAUAUUAAAACGGAGAAAGUGGAACGAAUUGUACUUGAGUUGUAGGACUAGCACACAUGCAUAUGUCGUCCUUGUAAAGUAAACGUGGAGGUAUAUUACUGGGAAGUUGAGUUUUUUCUGUGCUGUGUGUUGGGUGCGCGCGUGCUUAAUCAUAUUAAAUUUUAGUUUAAAUCUUUAGUUUUCCUAAGCCACUACCAACAGUAACUUGCUUCACCAGCGACCAAUAUUUUGCUAUAGUGCAACAGUUCCUUCCGGCUGCGCAGUGGCGUAGCCAGGAAUUUUUCUUUAGGUAGUCCUAGUUCACACGUUCAUGUCACGUGGUAAAAUUUUCCUUGCACCAUAAAACUGAUAUACAAAUACAAAUUUUGUGAAAAUGUGAUAGAAAUAAUAUCUUCCAAUGUCCAUAAGCGGCUUACUUAACAAGCAAGUUCAAAAUGUGCAAAUAUUACAACAUAGAAAGUUCAACAAUCAAUAUAGAUCUUACACAUAAAUAGAAAAUUACAAAGCCACUACCGCAGUGUACGCUUGGCCUUAGUCAUGAAAGUUUGUAUAAUGUCUUCCUCACUAACUUUGGAGAAGAUGUCUUUCUCAGUAUAUGUGACUAAGCAAUGAUUCAAUAGAUCAUCAUAUAUUCACUAAUCAGUAACAAUUUAUAAAUUGCAUACUCAGUUAUUCACAGACUCACUAAUCUCUAAUCACACUUCACAAAUCGAUUUAGCCAUUUAGGAAGCUAUUCGUUACCUGGGCUGAGCCACGGAGGGGAGACGGCGGCACGGAGCGGCGUCGGCGCGGACGGCGGGGAGGCCGAAGGGGAGGACGGUGUGGCGCUGGCGCGGACGGCGGUGGCGACGCCGGCACGGAGACGCGGAGUCGCGGCCUCGCGAGGAGGGGAUGGGACGGCGGUGGCGGCGCCGCCUCGCCGGCGGGGAGUCGCAUAAGGAGGGGAGGCCGGAGGGGAUGGCACAGCGUCGGCGCGGACUGCGGGGAGCCGGCUAGCUGGGGACGACACCGGGCACCGGCGCGGAGUCACAGUCUCGCGGAGGCUGGCGGCUGGCGGCGUUGGGCUCGGGCGAUUGGGCGAACUGGCUGAGACGCUGAGUGCCUGGGACUCUCCAACCCUAAUGUUUCUGGGCUAUUUGGGCCAAGCAACCUAUUUGGGCCUAAAUUUUUUAGGGGGUGGGGGGUCUUUGGGCCAAAUUUUAGGGUAGUCCCGAGCCCACCGGGACUACCAGCUAGCUACGCCCCUGCGGCUGCGUGUGCCAUGCGAUGCUCUGUCGUGGCUGUCAUCUGUCCGUCCGCUUGCCAACCCGAUAUGCUUGCCCUCUCCACCACACAUCACACACCCAUCAAUCCUCAAUUCAUCUGCUUGCCCUCUACAGCACACACCCAUCAAUUCUCAAUUUAUGAAAAGAAAUCCCUAAUCCAUCGGAGAAAUCGACGCCAACCCCUCCGCCCCAUCGAUCACCAGUUCGCCGACGACUGCCUUUCUCUUCCCCGACCUGCGUUCUUCCCCACCCACCGCCUGUGAUUGUAGGGUUGCCCCGUGGUGGUUGUCGCUGGUUAUAGUCGUCGUCCAGCUAUCUCUAUUGGUCAGGCUGCCGGCGCACUGGCCGCACCCAUCAAGGCUCCCGAUUGUUGCCCUGGUCGAGCGGCUGCCAUCUGCCAGCACGUCCGCUCCGGACAGCUGACUUCAUCCUCGGUUUUCUUCGCUAUCAAGAGAAAGAAGGCUACUAUGGUUGAAUACUUUGCAUAUAGGCUUCAUGACAGAGCUGAUGACAUCAAUACUCCUAUGCGCUGCAAGAGAGCUGCAAGAGAGGAACCCAGGCUUAUGUCAUAGAUGCCUAUUGUUGUAUGGAAGAAUCUCACCUGAGUCACUACAGAUUCAAGACAUUUCAGCUUAAGUAUAGAGCAGCUUCAUUCAAUGAGUCUCAUCCGAUGGUGCUUGCAAUUUCCGACGACGUGGCUCAUUCUUCUUUCAAGCAGCUUGCUGCUUUCACCUAUCUAGAAUCCUUAUGGUCAGAGGUAACACAAGCUUUGGCUACCAUCCCUGGGCAACACUCAGCUGAUAGGCCUGAUAUUAUUAAUCAUGUAUUCCAUGUUAAGCUGCACCUCUUCAUGAACGACAUCGUAAAGAAGAAAUUUUUUUGGCCCUGUCACUACAGUUGUGUACACAAUUGAAUUUCAGAAGCAUGGACUUCCACAUGUUCACAUCAUAUCGUGGUUAGAUAAGAGUGGUCCAUUGACACUUGCUGAUAUUGACAGACUAAUAUCGGCACAGCUUCCAGAUCCAUCCAUUGAUCGAGUUGGUUAUGACGCUGUUGCGGCAUUCAUGAUGCAUGGACCUUGUGGUGAUGCAAAUCCAUAUUGUUCAUGCAUGGUUGACAGUAAAUGCUCAAAGAAUUACCCAAAGGAAUAUUGUGAUAAAACAACAAUCCUGCCAAAUGGCCAUGUAAGGUAUGCUCGGCCAAAAAAAUGAUAUAAUUGUUGCCAAAAAUGAAAUUUCUCUUGAUAAUCGGCAUGUUGUCCCCCACAAUAUCGAUUUAUUAGUCAAAUAUGAGGCGCAUGUCAAUAUGGAAAGAGAUAAUCGUGAUGGAAUGGAAAAGUAUCUAUUCAAAUA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
1.83%
ME_num:
MEP:
50.81%
HE_num:
HEP:
47.15%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
2nd_leaf
Tau :
0.82
Avg Expression:
40.80
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Caidao // leaf // none (control)--/--Caidao // leaf // 0.5% Na2CO3 solution for 36h | -1.53050393912742 | 1.43810901266873e-06 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hN | 1.32161342544504 | 9.39311340808548e-08 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN | 1.44465430640278 | 2.03934665501822e-09 |
| 4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dA | 1.68578256830691 | 4.31473245510188e-08 |
| 5 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN | 1.61243979145215 | 2.52948297934261e-09 |
| 6 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA | 2.03269184294745 | 8.73028768394738e-17 |
| 7 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hA | 1.25410269340569 | 1.29707119350867e-07 |
| 8 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_BLS256 | -1.07463184617532 | 1.85245664795319e-08 |
| 9 | WD20342 // leaf // none (control)--/--WD20342 // leaf // 0.5% Na2CO3 solution for 36h | -1.9342575861724 | 0.0237962052659175 |
| 10 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA | 1.75331450014653 | 1.07354958922998e-14 |
| 11 | Nipponbare // leaf // Watered;Long_Day--/--Nipponbare // leaf // Drought;Long_Day | -1.11594010881819 | 2.57451743977802e-11 |
| 12 | Nipponbare // leaf // Non-inoculated--/--Nipponbare // leaf // Inoculated with Pyricularia oryzae | -1.05463271156747 | 2.24096749933615e-17 |
| 13 | Nipponbare // leaf // Watered;Long_Day--/--Nipponbare // leaf // Watered;Short_Day | -1.19694850781244 | 1.62837503660852e-05 |