Chr:
Chr7
Start:
21486153
End:
21504199
Strand:
-
Ref_name:
LOC107281476
Sequence
(XR_001547157.2):
GGCCUCCUGCACCAGCCUGAACAGCUGCUUGUAGGCCUCCCAGUCGUAGGACCCGGGGCCCUUCCCCUCCACCAGCCCCCACCACACGUCCACCAUGACGCCAUCGACGCCGGCCUCCGUCAGCUUCUUCAGCUGUGCCCGGGUCUCAUCGACCUUCUCGAACUUGUUGUCCACAGUCACCACAUCCAGCUACAUAUCUCGCAACAGAAUUCAGGACGCUCAUGGGCUAUUUAUACUUGCAAAAAGGAGAGGGGGGCUCUUCUCCACCGGCGGGAACCAACCAAUCCUUUUCUUCCAGGCUUCGAUAGUUGAUAUCAUUCAGCAUUUCAGUUGUUGUGCACACAUUUUGUUCAUCCUCGAGUACCAUCGAUUCAUGCUUGCUUGCUGCAGUUCAGCAGGCUCAUGGUAUGGUACCGCUGUUUUUACCUGGUUAAAAGUUUUACUAUAGCUAUGUACGUCAGCUUGCAGUCAUGCACGGUUCUCAUAGGGUGGUUAAUUUCUACUCCCUCCAUCCCAAAAUAUAAACACUUUUAGAAUAGUACAGAGUCAAAAUAUUUUUAACUUUGACUAUUAAUAGCUAAAAAAUAAAAAUAUCAAUGAUGUAAGAAUAAUAUGACUAGAUUUAUCAUUAAACAAACUAUCAUAAUAUGUAACUCUUUUUAUUUAAACCAUCUUAUUUUUGUAAAUAUUUUUAGUCAAAGUAAUAUCUCAAUGACCGUGUCAAAGUUCAAAAAUACUUAUAUUUUAGGACAGAGUGAGUAGUAUUUACUAUCAGCUCCAUGAAUUUACUAUUGCUCAGUACUCCCUCCGUUUCACAAUGUAAGUCAUUCUAGCAUUUCCCACAUUUAUAUUGAUGUUAAUGAAUC
Sequence
(XR_003243477.1):
CCAGCCCCCACCACACGUCCACCAUGACGCCAUCGACGCCGGCCUCCGUCAGCUUCUUCAGCUGUGCCCGGGUCUCAUCGACCUUCUCGAACUUGUUGUCCACAGUCACCACAUCCAGCUACAUAUCUCGCAACAGAAUUCAGGACGCUCAUGGGCUAUUUAUACUUGCAAAAAGGAGAGGGGGGCUCUUCUCCACCGGCGGGAACCAACCAAUCCUUUUCUUCCAGUUCCAUGGUAAUAGAAGCUCUUUGUGAAAUUGGGGAUCCAAAUGGUUCGGAUGUUGAUGCAAUUUGCCACUACAUAGAGGUUGUGCAUCUGCACAAAUUUUCUUAUUUGGUAUCACUAUUUGCCAGUAGUUAUUUUUAUUUCUUCUGAAUUCAUUCAAGUUUUGUUCGUUCUUGAUUUCGUAAUAAAUUAUGAUUCAGAUAUGUGUACAACUAACAUGAUCAGAAUAUUAACAAAAUGCGAUUGCUUGAUUCUUUUUCUCUUCUGAAUCAUUGCCUGAUUGACUGUAUGGUAUAAAGUCCCUCAGUUAUUGGUAUAUAUGUGUGCCAUUGUGUUUAUUUCAGCUUCCUAUACUUUAGGAAGCUUCUAAAAGUGCCUUUGCUACUACCGGAGCUUUCACUUUGGAUUUUAUAAUAAUUUCCUGCACAACUACCAUUUCCCAUUUCCCGCUAUCUUCCUCGCAUAAUCAAUAGCUGGGUACACAUUUAGGGCCUCUGCAUGACGAGUUGAUGACUAUGCAUAACAUUGGUUGGAGGAUAGGGAAGCCUCACUGAGCUGCCUCACUGAGCUAUCUUCUCAGCAUUUGUUUUGAUUUGAGGGAAAUUUGCGAUUUAAAGAUUUUGCAAUUAUAACUCUGCAUCAAGCCCAUAAUUCAGAUUCUUCAUUUUACUUCUCUUUUGUAAAAUUGGCAUUCAAUAACUCAAUUUACAAUUAUUCA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
18.7%
ME_num:
MEP:
76.63%
HE_num:
HEP:
4.47%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
callus
Tau :
0.76
Avg Expression:
8.03
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Caidao // leaf // none (control)--/--Caidao // leaf // 0.5% Na2CO3 solution for 36h | -4.92217073510794 | 0.000132044980201356 |
| 2 | Nipponbare // shoot // Drought_during_3_days;_mock_inoculated--/--Nipponbare // shoot // Drought_during_3_days;Fr13_inoculated | -1.1891980059275 | 0.0133536000535689 |
| 3 | WD20342 // leaf // none (control)--/--WD20342 // leaf // 0.5% Na2CO3 solution for 36h | -6.63572969465138 | 0.00121981883939467 |
| 4 | Nipponbare // leaf // Non-inoculated--/--Nipponbare // leaf // Inoculated with Pyricularia oryzae | 1.66975582160578 | 0.00068572130847012 |
| 5 | Nipponbare // panicle // AM--/--Nipponbare // panicle // PM | 1.07271091036273 | 0.0402077244022747 |