Chr:
Chr1
Start:
25818080
End:
25818889
Strand:
+
Ref_name:
LOC107281463
Sequence
(XR_001547065.2):
GACCGAAAGAGAGGCGAGCAGGAGUAGUCAUGUGUACAUUGGCCAUCACAUCAAUCGUGCCGCUCGACGGCUCGACUCACAGGACACAAGUGACUGCAAUAAUAAUACUAUAAUCAUGACGGGUCCAUCAAUUUCUGCAUCUCCGUCCCCCAAAAAAGCAAGUGACAGACAGCACAGCUCCACUCCAUGGCUGCCGUAGAAAUUUUUACUACAGUCAUCAGGAGUAAAAGCACGGUCCCGGUGCCGUCGUCAUCGCCACACGCGAAAGCAACAGCAUCGCAGCUAUGCGCAGCGGAAGAUUGCAUGCGCCAACGCCAGGCGGAGGCCGUUUGGCCGCCGCCUCCGCUGCUGCCGCCGCCGGUGGCACCACGGAAGCACGAGUAUACUUCUCUUCGUUCCCCUUCAAGUGCUAUCAUGGAUUUUGGAUCUGGAAGCUCAGGCUAGUGCAUGUGCAUCUAGCAAUACUAGUGCUAGCGCGGCUGCUCAUGCAGCUGCUGAUUUAUCAAGAGAAAGCAAGGGCAAGUAACAUCUUGAUAUUGGUGGUGGUCGAUCGGUAGGUGCUGGGUCCUACUUGCCUAGUCGGCACUUCACUUGAUGUUGUAAGCACGAUGCAUCAAUUUAUUUGUCUUUCAUGUAUGUGUUGAUUUUUGUCUGAAUUCGCCAACUUGAAUUAUCUAGAAAAGAUGGUGAGUGAUUGCAUUUAAUUGAUA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
51.42%
ME_num:
MEP:
45.12%
HE_num:
HEP:
3.25%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
callus
Tau :
0.77
Avg Expression:
3.79
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hN | 3.30904030269098 | 0.0139293155826258 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hA | 3.94268749580606 | 0.00100977847879999 |
| 3 | Nipponbare // root // "mock,14_days"--/--Nipponbare // root // "auxin(50CM_2,4_D),14_days" | 2.43674109946776 | 8.31005229477743e-10 |
| 4 | Nipponbare // root // "mock,7_days"--/--Nipponbare // root // "auxin(50CM_2,4_D),7_days" | 2.08054841597421 | 0.000105558704699107 |
| 5 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA | 2.95138002476631 | 0.0295761778614188 |
| 6 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN | 2.99720348589352 | 0.0231393067747165 |
| 7 | Nipponbare // leaf // Non-inoculated--/--Nipponbare // leaf // Inoculated with Pyricularia oryzae | -3.53610000651369 | 0.0443622511947708 |
| 8 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hA | 3.22158472435424 | 0.020614752962098 |
| 9 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA | 2.93142927039047 | 0.0224366880401696 |