Chr:
Chr6
Start:
6235785
End:
6239248
Strand:
-
Ref_name:
LOC107281460
Sequence
(XR_003242970.1):
UUCUGUGGAACUACAUCUGCCCUGCUUACUACCAGCCGCCAUUUGCAGGACAUCCAAUUGAACAACAGCGCUGAAGUAGGGAAUAUUGGAUGCUCAACCACACCAAGUUUUGAACCUAUGAUGUGGACCCGAUCACCUUCAUCGACCCGAUCACCUUCAUCAGAUAUUUCCCACGUGCUAAACCAAGUGUGGGUUCCUUGUUCUUACCUCUGAAAGACAUCCAUGCACGCAACAUGAGAAGAAAACAGCCAUCUCAUCACCUUGUCUGCCUUCCUCCUACCAUUUUCUCGAGGAUCAUAAACAAAUGGAGAAGACACAAUUAGAGAUAUAUCCUUGAAUCCAUAUUAUUUUUCUUUGACCAUGGCUCCACCAUAUAGGGGCAGUUUGAAAAGCUGCUGAAAUCAAUACAAAGCUUAAGAAGACAGUCAUUCCUGCCUGGUGAUUGUUCUCUUGAUUAGGGUGGGUCUGGCUCUGGAAAUUCCAUUGUCGCAGAUCAACUAUGGUGCCCUUGAAUAUCACAUUUCAUCUGAGAAUCCAAUUACUGCCUUCUUUGAUUAAGACAACCUGGGAAGAUCUUCAUAUAUUGAUUUUAAAUCAUGAUGUUACAAAAAUAGUAUCGCAUAUCAAAUAUUUCUUUUUAUGUUGUGCUUUUGUUUUUGAAGUUAGGUGUGAACAUGAUACACAAGUUCAUAUUUUUAUGAAUUUUACAAACAUCCUUUUCAUAGUGCACUCUGGAAGAGCAUGAAAAAGCACCAUAAUGUUUUGGGUGUGGGGGAGGGUGCAAAAUUUUCAUGCUGUAUCAUCAUUGUCCCACUUUUUUGUUGGGGGCAAACUACAUAAUCACACUAUAUUUUUCCAAUACUGCUGUCUAAAACAAAUUUGUAUGCUAAUAUACAUGCAAAGGCAGUAGCAUAUACCACCUGAUUCUUAUAUUAAUUUUCUUGUCUUUCAUGGGUUAUGGGCUCCCAACGGCUUGAAAGCUCAAGCUCUCAACAACUAUUUUUCCUGUAGGUUCCAUUUCCAAUCCAAAUCGCCCAAGAUCUUUGCUGAUGUCUGCAACCGGACGAAUGCAAAUCAUGUGACGGUUCAAGGUAAUAUAAAACUGUAAAAAAGAGGGUAAGGGACCAAAUUUUGUUUGGACAUAGUUUUGCUGUACCCCUAUUGAAAACAAAAUACGUCGCCUUACCAUCUAAUGUGUUUCGUCGGAUCUCACGGACAAGCCUAGUCCAGGUAUGUAGGAACUUGCCCCAAGUAAGAACAGGUGACUCUGACUUCUGAGUGUUGCUCCAUACUAAAAUGCUAACCUUAUGCAUCGACAGAUCUGCCAUGGCUGCAUAGGCUGGUGCUGGUACAGAAUACCAAUGAUUGGGAUUACACACAUUCAAUGAGAUAGUGUCGGAAAAUUGUUAGAUCAUGGAUGCAUGGGUAUUAUUCAGACAAUCAAACAUCCAUAACCUGAAAUAUUCCACUGUUUGUGUUACAUGGCAGAUGCAUUCAUGGCUAGGAACGCACGUGUUCUGUGACCGGAGUCCGGAGAAGAUCAGCAUUGACAUGUGUGGGCACUUGAGGAGGAGUUGGUGUGCAGCAAGUAGGCAACACUACCUGGAGCUUCAAGUUAGUUUAUCUGCUUCCAAUAAAGACAGGUCCUCUUCAUCGGUGACGAACUUUGCCGCUCUCGACACUCUUUCAAGCAGCUGCCAUUGUUUGAAACGACCCAGAUGCCUCCGGCCAGCCUGCAGGGCUGCCAGGCGCUCUCUUGGACGCCAAAUCCUGGUUUUAUUGGGCUUCCGGUCGAGCUUUCAAGAUGGAAGUUGAGGCCCAAGCCUAGGCCGACUUGACCGGGUUGAGCUGUCGAACGUGUGCUGCUGGGCAAAUUAAUACUCACUCCGGCCCAUAAUAUAAGGGAUUUUGAGUU
Sequence
(XR_003242971.1):
UUCUGUGGAACUACAUCUGCCCUGCUUACUACCAGCCGCCAUUUGCAGGACAUCCAAUUGAACAACAGCGCUGAAGUAGGGAAUAUUGGAUGCUCAACCACACCAAGUUUUGAACCUAUGAUGUGGACCCGAUCACCUUCAUCGACCCGAUCACCUUCAUCAGAUAUUUCCCACGUGCUAAACCAAGUGUGGGUUCCUUGUUCUUACCUCUGAAAGACAUCCAUGCACGCAACAUGAGAAGAAAACAGCCAUCUCAUCACCUUGUCUGCCUUCCUCCUACCAUUUUCUCGAGGAUCAUAAACAAAUGGAGAAGACACAAUUAGAGAUAUAUCCUUGAAUCCAUAUUAUUUUUCUUUGACCAUGGCUCCACCAUAUAGGGGCAGUUUGAAAAGCUGCUGAAAUCAAUACAAAGCUUAAGAAGACAGUCAUUCCUGCCUGGUGAUUGUUCUCUUGAUUAGGGUGGGUCUGGCUCUGGAAAUUCCAUUGUCGCAGAUCAACUAUGGUGCCCUUGAAUAUCACAUUUCAUCUGAGAAUCCAAUUACUGCCUUCUUUGAUUAAGACAACCUGGGAAGAUCUUCAUAUAUUGAUUUUAAAUCAUGAUGUUACAAAAAUAGUAUCGCAUAUCAAAUAUUUCUUUUUAUGUUGUGCUUUUGUUUUUGAAGUUAGGUGUGAACAUGAUACACAAGUUCAUAUUUUUAUGAAUUUUACAAACAUCCUUUUCAUAGUGCACUCUGGAAGAGCAUGAAAAAGCACCAUAAUGUUUUGGGUGUGGGGGAGGGUGCAAAAUUUUCAUGCUGUAUCAUCAUUGUCCCACUUUUUUGUUGGGGGCAAACUACAUAAUCACACUAUAUUUUUCCAAUACUGCUGUCUAAAACAAAUUUGUAUGCUAAUAUACAUGCAAAGGCAGUAGCAUAUACCACCUGAUUCUUAUAUUAAUUUUCUUGUCUUUCAUGGGUUAUGGGCUCCCAACGGCUUGAAAGCUCAAGCUCUCAACAACUAUUUUUCCUGUAGGUUCCAUUUCCAAUCCAAAUCGCCCAAGAUCUUUGCUGAUGUCUGCAACCGGACGAAUGCAAAUCAUGUGACGGUUCAAGGUAAUAUAAAACUGUAAAAAAGAGGGUAAGGGACCAAAUUUUGUUUGGACAUAGUUUUGCUGUACCCCUAUUGAAAACAAAAUACGUCGCCUUACCAUCUAAUGUGUUUCGUCGGAUCUCACGGACAAGCCUAGUCCAGGUAUGUAGGAACUUGCCCCAAGUAAGAACAGGUGACUCUGACUUCUGAGUGUUGCUCCAUACUAAAAUGCUAACCUUAUGCAUCGACAGAUCUGCCAUGGCUGCAUAGGCUGGUGCUGGUACAGAAUACCAAUGAUUGGGAUUACACACAUUCAAUGAGAUAGUGUCGGAAAAUUGUUAGAUCAUGGAUGCAUGGGUAUUAUUCAGACAAUCAAACAUCCAUAACCUGAAAUAUUCCACUGUUUGUGUUACAUGGCAGAUGCAUUCAUGGCUAGGAACGCACGUGUUCUGUGACCGGAGUCCGGAGAAGAUCAGCAGCAUUGACAUGUGUGGGCACUUGAGGAGGAGUUGGUGUGCAGCAAGUAGGCAACACUACCUGGAGCUUCAAGUUAGUUUAUCUGCUUCCAAUAAAGACAGGUCCUCUUCAUCGGUGACGAACUUUGCCGCUCUCGACACUCUUUCAAGCAGCUGCCAUUGUUUGAAACGACCCAGAUGCCUCCGGCCAGCCUGCAGGGCUGCCAGGCGCUCUCUUGGACGCCAAAUCCUGGUUUUAUUGGGCUUCCGGUCGAGCUUUCAAGAUGGAAGUUGAGGCCCAAGCCUAGGCCGACUUGACCGGGUUGAGCUGUCGAACGUGUGCUGCUGGGCAAAUUAAUACUCACUCCGGCCCAUAAUAUAAGGGAUUUUGAGUU
Sequence
(XR_003242972.1):
UUCUGUGGAACUACAUCUGCCCUGCUUACUACCAGCCGCCAUUUGCAGGACAUCCAAUUGAACAACAGCGCUGAAGUAGGGAAUAUUGGAUGCUCAACCACACCAAGUUUUGAACCUAUGAUGUGGACCCGAUCACCUUCAUCGACCCGAUCACCUUCAUCAGAUAUUUCCCACGUGCUAAACCAAGUGUGGGUUCCUUGUUCUUACCUCUGAAAGACAUCCAUGCACGCAACAUGAGAAGAAAACAGCCAUCUCAUCACCUUGUCUGCCUUCCUCCUACCAUUUUCUCGAGGAUCAUAAACAAAUGGAGAAGACACAAUUAGAGAUAUAUCCUUGAAUCCAUAUUAUUUUUCUUUGACCAUGGCUCCACCAUAUAGGGGCAGUUUGAAAAGCUGCUGAAAUCAAUACAAAGCUUAAGAAGACAGUCAUUCCUGCCUGGUGAUUGUUCUCUUGAUUAGGGUGGGUCUGGCUCUGGAAAUUCCAUUGUCGCAGAUCAACUAUGGUGCCCUUGAAUAUCACAUUUCAUCUGAGAAUCCAAUUACUGCCUUCUUUGAUUAAGACAACCUGGGAAGAUCUUCAUAUAUUGAUUUUAAAUCAUGAUGUUACAAAAAUAGUAUCGCAUAUCAAAUAUUUCUUUUUAUGUUGUGCUUUUGUUUUUGAAGUUAGGUGUGAACAUGAUACACAAGUUCAUAUUUUUAUGAAUUUUACAAACAUCCUUUUCAUAGUGCACUCUGGAAGAGCAUGAAAAAGCACCAUAAUGUUUUGGGUGUGGGGGAGGGUGCAAAAUUUUCAUGCUGUAUCAUCAUUGUCCCACUUUUUUGUUGGGGGCAAACUACAUAAUCACACUAUAUUUUUCCAAUACUGCUGUCUAAAACAAAUUUGUAUGCUAAUAUACAUGCAAAGGCAGUAGCAUAUACCACCUGAUUCUUAUAUUAAUUUUCUUGUCUUUCAUGGGUUAUGGGCUCCCAACGGCUUGAAAGCUCAAGCUCUCAACAACUAUUUUUCCUGUAGGUUCCAUUUCCAAUCCAAAUCGCCCAAGAUCUUUGCUGAUGUCUGCAACCGGACGAAUGCAAAUCAUGUGACGGUUCAAGGUAAUAUAAAACUGUAAAAAAGAGGGUAAGGGACCAAAUUUUGUUUGGACAUAGUUUUGCUGUACCCCUAUUGAAAACAAAAUACGUCGCCUUACCAUCUAAUGUGUUUCGUCGGAUCUCACGGACAAGCCUAGUCCAGAUCUGCCAUGGCUGCAUAGGCUGGUGCUGGUACAGAAUACCAAUGAUUGGGAUUACACACAUUCAAUGAGAUAGUGUCGGAAAAUUGUUAGAUCAUGGAUGCAUGGGUAUUAUUCAGACAAUCAAACAUCCAUAACCUGAAAUAUUCCACUGUUUGUGUUACAUGGCAGAUGCAUUCAUGGCUAGGAACGCACGUGUUCUGUGACCGGAGUCCGGAGAAGAUCAGCAUUGACAUGUGUGGGCACUUGAGGAGGAGUUGGUGUGCAGCAAGUAGGCAACACUACCUGGAGCUUCAAGUUAGUUUAUCUGCUUCCAAUAAAGACAGGUCCUCUUCAUCGGUGACGAACUUUGCCGCUCUCGACACUCUUUCAAGCAGCUGCCAUUGUUUGAAACGACCCAGAUGCCUCCGGCCAGCCUGCAGGGCUGCCAGGCGCUCUCUUGGACGCCAAAUCCUGGUUUUAUUGGGCUUCCGGUCGAGCUUUCAAGAUGGAAGUUGAGGCCCAAGCCUAGGCCGACUUGACCGGGUUGAGCUGUCGAACGUGUGCUGCUGGGCAAAUUAAUACUCACUCCGGCCCAUAAUAUAAGGGAUUUUGAGUU
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
66.87%
ME_num:
MEP:
32.93%
HE_num:
HEP:
0.0%
Type:
MCR ()
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
callus
Tau :
0.80
Avg Expression:
2.73
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hN | 1.05865472079133 | 0.00590298505842124 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hN | 1.43147065786892 | 8.32138030501304e-06 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dA | -1.6299647700883 | 0.0137700660375077 |
| 4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA | -2.86331832673564 | 4.869878843814e-05 |
| 5 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hA | 1.2836928800325 | 3.78537771805022e-05 |
| 6 | Nipponbare // shoot // Drought_during_3_days;_mock_inoculated--/--Nipponbare // shoot // Drought_during_3_days;Fr13_inoculated | 5.57657159128258 | 8.31918705460717e-05 |
| 7 | Nipponbare // shoot // "Control, 22C for 10 min, then 30C for 50 min"--/--Nipponbare // shoot // "Heat, 42C for 10 min, then 30C for 50 min" | 5.58060318835484 | 0.0453304187927587 |
| 8 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA | -2.32406973255447 | 4.38791494970045e-05 |
| 9 | Nipponbare // shoot // No_DIS;_mock_inoculated--/--Nipponbare // shoot // No_DIS;Fr13_inoculated | 5.01090458190538 | 0.0278053788605405 |