Chr:
Chr1
Start:
5397398
End:
5399281
Strand:
+
Ref_name:
LOC107281454
Sequence
(XR_001546994.2):
UACGACAAGUCCCCCAACUUUCGAAACCGUUUAAAUGUUGUCCCUCGGCAGUAUUGCAUCUGGUUUUUGCUGAGGUGGCGCCUACGUGGCUAGGUCUUUGUCCAAUGUGUCAAUGUGGCGGUUACGUGGCAAUUAGAUCCGAAAAAAUAAUAGUACACGUGGGACCCACAUGUUAGUCGCACACAACUUAAAAAAAUGGUGGGCCCAUGAGGACCCAGACGUCAUCCUCUCUAUCCUCUCUCUCCCUGUUCUAUCGCUCUCCAGCCGGCGGAACGGGAUGGGCGGCGGCCGGAGCGGGCGACGGCGGGGCGGAGCGGCGGCGGAGGCAGAGCGGGGCGGAGCCGAAGGGCGAAGCGGGGCGGGCGGCUGCCGAAGCGGGGUGGAGCGGGGGCGAGCGGAUGUCGUCGAGCCGUCGCCAUCCUCGCCGCGGCGGACACCGUGAACGACGACGUGCUCGCGCGCGGGUGGUCUUCAACUCGGGGGUGUCCAACCCGGGGAAGGGAGGGGGGGGGGAGCUCCUGGCGCCGUGGUUGGAGGACGCCGACCGCGCCCAACGACGACGAGCGCGCGGAGAAGGAUGAGGCGGCGGAGGCUGUGGUGUUCAUCAACGGGGAGGACGAUGAGGCGACGAUCUGUCCGGGUUCAGGGGCCUGGUUCUUGAUCUCUCUUAUAGUGAUCGUGUUAGAAAGAGAUAAAAACAAUUUGAAGGAAUUUUGCAUUUUUACCUCGAAAUAUAACCAGGCCUGUGAACGUUGUCUGCUGGAAGCGCGCAAUUUGUUUGGAAUUCAUGGCGAAGCAGCGCUCAGAGGGGCAGAGCACACGGCGGCGAUGGCAGGAGCUUGGCGCUUCGACGGCGUCGGUUCUUGACCCCGUAGCCGACGACGGCGAGGAGCGCGACGGCGGUGAGGAAGACGUAGACGUCGUCGUCAGCAGUAGCCUCCGCCGCCGCCCACGGCCGUGCUGCCCCGCGUCCCCCUCGAGGAGGGGACCGACCUCGCCGCUGCCGUCGCGCACGAGGGCUCCGGCUGCUACGUCCUCACCGUCCUCCGCCGCGCCCUCCGUCCUCGCCGGAAGCAGGAAGGGUGCCGCCCGGGUCGUCACGCGCGCCGCCCAUUCUCCCCGUCGGCCGCUGCUCGUCGGUCGUCCUCCCCAUUGGUCGCCGCCCGUCCUGGUGCCCCUUCUCCCCGCCGGUCACCGCCCAUCCCGGCGCCCCUUCUCCCCGCCAGUCGCCGCCCGUCGCGCCAUUCUCCUCGCCGACAGUCACCCAUCUCUUCGUUGCCUGUCACGCCGUCCACCCCGCCGGCCGCUGCUCGUCUCGGCGCCCUAGCUGCAUCUCCUCCUCCUCCGGCGGCCACCGCCGGACACUGCCCCUUCUCCCCGCCGGCCACCGCCCGUCGGCCGUCGCGCCCGAGAGAGGAGAGGAGGGAGAGAGACGAAGAGAGGGGAGAUGGGGAGUGAGGAGGAAGAAGAGGGGAGUGAGAUUGACAUGUGGGCCCAUGUGGGCUCCAUCUUUUUUAAUUAUUGUUUUGUGUAACUGACAUGUGGGUCUCACGUGUAUUAUUUUUUUUCCAAAUCAAAUUGCCACGUAAGUGCCAUGUCAAUGCCACGUGGGACGGAGACCUAGUCAAACCAGUCACGUAGGCGCCACGUCAGCCAAAACCACUACCCAAACCGCUUUAGGACCUUAUGUGUCCGGUUUUCGUAAGUUGGGGGCCGG
Sequence
(XR_001546996.2):
UACGACAAGUCCCCCAACUUUCGAAACCGUUUAAAUGUUGUCCCUCGGCAGUAUUGCAUCUGGUUUUUGCUGAGGUGGCGCCUACGUGGCUAGGUCUUUGUCCAAUGUGUCAAUGUGGCGGUUACGUGGCAAUUAGAUCCGAAAAAAUAAUAGUACACGUGGGACCCACAUGUUAGUCGCACACAACUUAAAAAAAUGGUGGGCCCAUGAGGACCCAGACGUCAUCCUCUCUAUCCUCUCUCUCCCUGUUCUAUCGCUCUCCAGCCGGCGGAACGGGAUGGGCGGCGGCCGGAGCGGGCGACGGCGGGGCGGAGCGGCGGCGGAGGCAGAGCGGGGCGGAGCCGAAGGGCGAAGCGGGGCGGGCGGCUGCCGAAGCGGGGUGGAGCGGGGGCGAGCGGAUGUCGUCGAGCCGUCGCCAUCCUCGCCGCGGCGGACACCGUGAACGACGACGUGCUCGCGCGCGGGUGGUCUUCAACUCGGGGGUGUCCAACCCGGGGAAGGGAGGGGGGGGGGAGCUCCUGGCGCCGUGGUUGGAGGACGCCGACCGCGCCCAACGACGACGAGCGCGCGGAGAAGGAUGAGGCGGCGGAGGCUGUGGUGUUCAUCAACGGGGAGGACGAUGAGGCGACGAUCUGUCCGGGUUCAGGGGCCUGGUUCUUGAUCUCUCUUAUAGUGAUCGUGUUAGAAAGAGAUAAAAACAAUUUGAAGGAAUUUUGCAUUUUUACCUCGAAAUAUAACCAGGCCUGUGAACGUUGUCUGCUGGAAGCGCGCAAUUUGUUUGGAAUUCAUGGCGAAGCGCUCAGAGGGGCAGAGCACACGGCGGCGAUGGCAGGAGCUUGGCGCUUCGACGGCGUCGGUUCUUGACCCCGUAGCCGACGACGGCGAGGAGCGCGACGGCGGUGAGGAAGACGUAGACGUCGUCGUCAGCAGUAGCCUCCGCCGCCGCCCACGGCCGUGCUGCCCCGCGUCCCCCUCGAGGAGGGGACCGACCUCGCCGCUGCCGUCGCGCACGAGGGCUCCGGCUGCUACGUCCUCACCGUCCUCCGCCGCGCCCUCCGUCCUCGCCGGAAGCAGGAAGGGUGCCGCCCGGGUCGUCACGCGCGCCGCCCAUUCUCCCCGUCGGCCGCUGCUCGUCGGUCGUCCUCCCCAUUGGUCGCCGCCCGUCCUGGUGCCCCUUCUCCCCGCCGGUCACCGCCCAUCCCGGCGCCCCUUCUCCCCGCCAGUCGCCGCCCGUCGCGCCAUUCUCCUCGCCGACAGUCACCCAUCUCUUCGUUGCCUGUCACGCCGUCCACCCCGCCGGCCGCUGCUCGUCUCGGCGCCCUAGCUGCAUCUCCUCCUCCUCCGGCGGCCACCGCCGGACACUGCCCCUUCUCCCCGCCGGCCACCGCCCGUCGGCCGUCGCGCCCGAGAGAGGAGAGGAGGGAGAGAGACGAAGAGAGGGGAGAUGGGGAGUGAGGAGGAAGAAGAGGGGAGUGAGAUUGACAUGUGGGCCCAUGUGGGCUCCAUCUUUUUUAAUUAUUGUUUUGUGUAACUGACAUGUGGGUCUCACGUGUAUUAUUUUUUUUCCAAAUCAAAUUGCCACGUAAGUGCCAUGUCAAUGCCACGUGGGACGGAGACCUAGUCAAACCAGUCACGUAGGCGCCACGUCAGCCAAAACCACUACCCAAACCGCUUUAGGACCUUAUGUGUCCGGUUUUCGUAAGUUGGGGGCCGG
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
39.23%
ME_num:
MEP:
57.93%
HE_num:
HEP:
2.64%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
flag_leaf
Tau :
0.77
Avg Expression:
2.83
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
Num. | Condition | log2(FoldChange) | Padj |
---|---|---|---|
1 | Nipponbare // shoot // Drought_during_3_days;_mock_inoculated--/--Nipponbare // shoot // Drought_during_3_days;Fr13_inoculated | -2.8042480013771 | 1.57042758809791e-17 |
2 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_B8_12 | -1.55846845287444 | 0.0292160524418787 |
3 | Nipponbare // leaf // Watered;Long_Day--/--Nipponbare // leaf // Drought;Long_Day | -1.39637323851734 | 0.0135153258676116 |
4 | Nipponbare // leaf // Watered;Short_Day--/--Nipponbare // leaf // Drought;Short_Day | -1.22491409958286 | 0.00906802447001272 |