OSA-LNC107281454


Function Link


Basic Info

Chr:

Chr1

Start:

5397398

End:

5399281

Strand:

+

Ref_name:

LOC107281454

Sequence
(XR_001546994.2):

UACGACAAGUCCCCCAACUUUCGAAACCGUUUAAAUGUUGUCCCUCGGCAGUAUUGCAUCUGGUUUUUGCUGAGGUGGCGCCUACGUGGCUAGGUCUUUGUCCAAUGUGUCAAUGUGGCGGUUACGUGGCAAUUAGAUCCGAAAAAAUAAUAGUACACGUGGGACCCACAUGUUAGUCGCACACAACUUAAAAAAAUGGUGGGCCCAUGAGGACCCAGACGUCAUCCUCUCUAUCCUCUCUCUCCCUGUUCUAUCGCUCUCCAGCCGGCGGAACGGGAUGGGCGGCGGCCGGAGCGGGCGACGGCGGGGCGGAGCGGCGGCGGAGGCAGAGCGGGGCGGAGCCGAAGGGCGAAGCGGGGCGGGCGGCUGCCGAAGCGGGGUGGAGCGGGGGCGAGCGGAUGUCGUCGAGCCGUCGCCAUCCUCGCCGCGGCGGACACCGUGAACGACGACGUGCUCGCGCGCGGGUGGUCUUCAACUCGGGGGUGUCCAACCCGGGGAAGGGAGGGGGGGGGGAGCUCCUGGCGCCGUGGUUGGAGGACGCCGACCGCGCCCAACGACGACGAGCGCGCGGAGAAGGAUGAGGCGGCGGAGGCUGUGGUGUUCAUCAACGGGGAGGACGAUGAGGCGACGAUCUGUCCGGGUUCAGGGGCCUGGUUCUUGAUCUCUCUUAUAGUGAUCGUGUUAGAAAGAGAUAAAAACAAUUUGAAGGAAUUUUGCAUUUUUACCUCGAAAUAUAACCAGGCCUGUGAACGUUGUCUGCUGGAAGCGCGCAAUUUGUUUGGAAUUCAUGGCGAAGCAGCGCUCAGAGGGGCAGAGCACACGGCGGCGAUGGCAGGAGCUUGGCGCUUCGACGGCGUCGGUUCUUGACCCCGUAGCCGACGACGGCGAGGAGCGCGACGGCGGUGAGGAAGACGUAGACGUCGUCGUCAGCAGUAGCCUCCGCCGCCGCCCACGGCCGUGCUGCCCCGCGUCCCCCUCGAGGAGGGGACCGACCUCGCCGCUGCCGUCGCGCACGAGGGCUCCGGCUGCUACGUCCUCACCGUCCUCCGCCGCGCCCUCCGUCCUCGCCGGAAGCAGGAAGGGUGCCGCCCGGGUCGUCACGCGCGCCGCCCAUUCUCCCCGUCGGCCGCUGCUCGUCGGUCGUCCUCCCCAUUGGUCGCCGCCCGUCCUGGUGCCCCUUCUCCCCGCCGGUCACCGCCCAUCCCGGCGCCCCUUCUCCCCGCCAGUCGCCGCCCGUCGCGCCAUUCUCCUCGCCGACAGUCACCCAUCUCUUCGUUGCCUGUCACGCCGUCCACCCCGCCGGCCGCUGCUCGUCUCGGCGCCCUAGCUGCAUCUCCUCCUCCUCCGGCGGCCACCGCCGGACACUGCCCCUUCUCCCCGCCGGCCACCGCCCGUCGGCCGUCGCGCCCGAGAGAGGAGAGGAGGGAGAGAGACGAAGAGAGGGGAGAUGGGGAGUGAGGAGGAAGAAGAGGGGAGUGAGAUUGACAUGUGGGCCCAUGUGGGCUCCAUCUUUUUUAAUUAUUGUUUUGUGUAACUGACAUGUGGGUCUCACGUGUAUUAUUUUUUUUCCAAAUCAAAUUGCCACGUAAGUGCCAUGUCAAUGCCACGUGGGACGGAGACCUAGUCAAACCAGUCACGUAGGCGCCACGUCAGCCAAAACCACUACCCAAACCGCUUUAGGACCUUAUGUGUCCGGUUUUCGUAAGUUGGGGGCCGG

Sequence
(XR_001546996.2):

UACGACAAGUCCCCCAACUUUCGAAACCGUUUAAAUGUUGUCCCUCGGCAGUAUUGCAUCUGGUUUUUGCUGAGGUGGCGCCUACGUGGCUAGGUCUUUGUCCAAUGUGUCAAUGUGGCGGUUACGUGGCAAUUAGAUCCGAAAAAAUAAUAGUACACGUGGGACCCACAUGUUAGUCGCACACAACUUAAAAAAAUGGUGGGCCCAUGAGGACCCAGACGUCAUCCUCUCUAUCCUCUCUCUCCCUGUUCUAUCGCUCUCCAGCCGGCGGAACGGGAUGGGCGGCGGCCGGAGCGGGCGACGGCGGGGCGGAGCGGCGGCGGAGGCAGAGCGGGGCGGAGCCGAAGGGCGAAGCGGGGCGGGCGGCUGCCGAAGCGGGGUGGAGCGGGGGCGAGCGGAUGUCGUCGAGCCGUCGCCAUCCUCGCCGCGGCGGACACCGUGAACGACGACGUGCUCGCGCGCGGGUGGUCUUCAACUCGGGGGUGUCCAACCCGGGGAAGGGAGGGGGGGGGGAGCUCCUGGCGCCGUGGUUGGAGGACGCCGACCGCGCCCAACGACGACGAGCGCGCGGAGAAGGAUGAGGCGGCGGAGGCUGUGGUGUUCAUCAACGGGGAGGACGAUGAGGCGACGAUCUGUCCGGGUUCAGGGGCCUGGUUCUUGAUCUCUCUUAUAGUGAUCGUGUUAGAAAGAGAUAAAAACAAUUUGAAGGAAUUUUGCAUUUUUACCUCGAAAUAUAACCAGGCCUGUGAACGUUGUCUGCUGGAAGCGCGCAAUUUGUUUGGAAUUCAUGGCGAAGCGCUCAGAGGGGCAGAGCACACGGCGGCGAUGGCAGGAGCUUGGCGCUUCGACGGCGUCGGUUCUUGACCCCGUAGCCGACGACGGCGAGGAGCGCGACGGCGGUGAGGAAGACGUAGACGUCGUCGUCAGCAGUAGCCUCCGCCGCCGCCCACGGCCGUGCUGCCCCGCGUCCCCCUCGAGGAGGGGACCGACCUCGCCGCUGCCGUCGCGCACGAGGGCUCCGGCUGCUACGUCCUCACCGUCCUCCGCCGCGCCCUCCGUCCUCGCCGGAAGCAGGAAGGGUGCCGCCCGGGUCGUCACGCGCGCCGCCCAUUCUCCCCGUCGGCCGCUGCUCGUCGGUCGUCCUCCCCAUUGGUCGCCGCCCGUCCUGGUGCCCCUUCUCCCCGCCGGUCACCGCCCAUCCCGGCGCCCCUUCUCCCCGCCAGUCGCCGCCCGUCGCGCCAUUCUCCUCGCCGACAGUCACCCAUCUCUUCGUUGCCUGUCACGCCGUCCACCCCGCCGGCCGCUGCUCGUCUCGGCGCCCUAGCUGCAUCUCCUCCUCCUCCGGCGGCCACCGCCGGACACUGCCCCUUCUCCCCGCCGGCCACCGCCCGUCGGCCGUCGCGCCCGAGAGAGGAGAGGAGGGAGAGAGACGAAGAGAGGGGAGAUGGGGAGUGAGGAGGAAGAAGAGGGGAGUGAGAUUGACAUGUGGGCCCAUGUGGGCUCCAUCUUUUUUAAUUAUUGUUUUGUGUAACUGACAUGUGGGUCUCACGUGUAUUAUUUUUUUUCCAAAUCAAAUUGCCACGUAAGUGCCAUGUCAAUGCCACGUGGGACGGAGACCUAGUCAAACCAGUCACGUAGGCGCCACGUCAGCCAAAACCACUACCCAAACCGCUUUAGGACCUUAUGUGUCCGGUUUUCGUAAGUUGGGGGCCGG


Expression Capacity

HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.

HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.


NE_num:

1

NEP:

0.2%

LE_num:

193

LEP:

39.23%

ME_num:

285

MEP:

57.93%

HE_num:

13

HEP:

2.64%

Type:

HCR (High-Capacity ncRNA)


Tissue Specific Expression

cutoff: tau > 0.9 and Average expression in the tissue > 10


Tissue :

flag_leaf

Tau :

0.77

Avg Expression:

2.83

Tip: OSA-LNC107281454 is not a tissue-specific expression ncRNA.

Differential Expression

cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01


Num. Condition log2(FoldChange) Padj
1Nipponbare // shoot // Drought_during_3_days;_mock_inoculated--/--Nipponbare // shoot // Drought_during_3_days;Fr13_inoculated-2.80424800137711.57042758809791e-17
2Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_B8_12-1.558468452874440.0292160524418787
3Nipponbare // leaf // Watered;Long_Day--/--Nipponbare // leaf // Drought;Long_Day-1.396373238517340.0135153258676116
4Nipponbare // leaf // Watered;Short_Day--/--Nipponbare // leaf // Drought;Short_Day-1.224914099582860.00906802447001272