Chr:
Chr6
Start:
14956163
End:
14959027
Strand:
-
Ref_name:
LOC107281442
Sequence
(XR_001546951.2):
GUAGAAGCCCAACAAAAAAGUCCACUACACCACCUUCUUCCUCUUCUCUCUUUUUCCUCGUUCUCCUCUUCUCUCCCUCACGCUCUCUCCAGCGCCGCCGCUUCCUAGGCAGCGCCGGCGACGCCGUCACUCUCCCUAGCGCCGGCUGCCGCGCCCCACUCCGGCGACCCCUCUAGCAGAUGUCCCGCAGCCGCGAAUCGGUUCCCCUAGCUCCCAUGAGCUCGUUUCUGCUAACCCUAGCCUCCAGCCUCCUCAACCUAAGAUGCAACCGGCGACCAACUCCGGCGAGAUAAGGAUUUAGGGAAGUUUUCCCCUGGCCCCUAUCGCUGCUACCACUUCAAUUUCGCUCUUCUAUCUCCUUUUCCCUGAUCUCUAGUGUUGUACUAGUAAGGUGUUCUUCCCCUUAUCUACUACUGAUUUAUGGUUGUAAUGCACUAAUGAUACUUGUAAACUAAUCCUAAUGAUCAACUUGAUGACUCUAUGCUAUGGAUUGUAAUUAGUAGUUCUAGGGUUCUAGAGAAAUUGGCUUGCUAAGAUGGAUGAUGCCUAUAUGCUCACGAUGAAUGAAUCCAGACAUGAAUAAACCCAUGAAUUGAAUUACUGAAAUUUAAAUCACACUAACAUCAUUGGUCCUUAUAUAUGCAUACAUGUUGAAUUAACUGAAUCUUCUGAAGAUAGUGACAUACUAGCAGGACCAGAUCUUUAGCUAAAAUCUUAUUCAAUGAUGAAGCAAUUUACAUGGUUCUACACUUUGAUAAUCAUGGCAAUAUCUAUACUAAGAAUUAUUGGACUGAAAAUCCCUAAAACUUGAAUCUUGAAGUUAAUAAAUGAUAAUUUGUUUCUCUAAAUAAUAUACUGCUGGUCUAUAUGUCCAGAAUUUCAUCUCUACAUAAUUUAUUAGAUUAGAGUUGUUGAUAAAUUAGACUACUGGUCAACUAUUAUUUAUAAUGGUUUUAUUAUGAGACUAUGCUCUAACAUUUACUCUCCUGCACAUAAUGAUCUGGUAAAGAAACUUGCAUGUUCUGUUAAGUCUUUACGAUUUAGUACAACUAUUAUUACUUAACACUAUACAUGCUUAAAUGUACAUCCAGAUUCAUCCUAUGAUGUCUUUUCUGAAUUUUGUAGUAAGGAACUAGAUACAUAUGCAAACCCAGAUUCAUAAUCUACUAAUUUCACAUGCUAUCCUUAAUUGCUCAAUUCUAUUCUUUUUACUAAAACCUGCUGCUACCUAAUCUUUUAUAUUUUAAUCUGAAAUACCAGUGCCUCCUGAACUUCUGCUAUAUUCAUAAGGUCAAAUUCAGUCAGGUUAUAAUUAGUUCUAAUUGUUUAUGUAAUCAAGGUUCCUACUAUAGGGUCUAUCAUGAAUCCUGAUUUCAAGAACUAUGCACAUAUGCAAACCCUUAACUGAAAUGCAUUUAUAACUCAUCUGGAAUAAUUCUUGUUGCUAACUAUGAAAUGAGAUAACCGAUCUGUACUUGAAUUAUCCUUCUGAGAAUCCACUAAAUUUAGGAUGAUAUUAUCCUGUCCAACUACUCAAAAAAACUUUACCUUAUUGAACUAAGGAUGCAUAUUCAGUAAUAUAACCCCAACAUCUAGUACUAGUAUAUGCACAGAUCAACAUGGCUGCCAUCUACUUAGGUUCAUUUUUCAGGUUUAAUGGAUAUAACUAAGUGCAUGCACACAACUCCUAAACAUACUAAUAUAUGCAUCAACCAAGAAUCAUGCCAUGAUGUGAUUUCCCUAUCAUUCUUAUUUCAGGAUUACCUUGUUAAUGACUCUGGUGUGGCUGUGAAGAUUGUGUGGUUUCUCCCUCUCUGGCACCAGCUGCUCCUCCAGAAACUAAGGGUAUUUGGGCAUUUCCUUCAUCUUCCUGAGCUGGACUGCUAGAUCACCACUUGCUCCUUCUUCAGGUGACUCACCUGCUUGCAUGCCGGUUGGAUAAGGGCUUGCUGCCACCUCAACAAAGCUGGUUUGGUGUGAUAAUCUCAAGCUAUAUUUACUAUCAGUAGAAAUUUUGUAAAGCCUGACAUGUUUAGUGCUUUUGCACUUGAGUCCCACAAGUUAGUAAAAUUUAAGAUUACUAUGAAUUUAGGGACUGAUAUGCAAUUGCCCUAGAACUCAAGAGUUUUUCUGAAAAAUAAAUAAUUAUUGAAUCUUUGACUGAGAUGGUUCAGUUUAUGAUAUGAUAUCUAUAAUCACCAUGUAUAUGCACAAUAUAUAGAAUGCAUACUGUAAAAUUUCUAGUGUACAAUUAUAUGCAUGUAUGUAUGCAGACCUGUAGUGGUAAACUGUAAAUAAAGAACUGUGAUUCUACUGUGCA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
2.85%
ME_num:
MEP:
20.93%
HE_num:
HEP:
76.02%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
2nd_leaf
Tau :
0.61
Avg Expression:
22.92
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hN | -1.49014042396543 | 2.56390538368453e-22 |
| 2 | Caidao // leaf // none (control)--/--Caidao // leaf // 0.5% Na2CO3 solution for 36h | -9.61748316164686 | 4.34787943869206e-12 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hN | -1.09590507444627 | 1.77854183211532e-15 |
| 4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dA | -1.43885480883779 | 2.46259485466421e-12 |
| 5 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA | -1.5112104853742 | 1.38409395870033e-22 |
| 6 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hA | -1.55259644404726 | 2.38549075301785e-29 |
| 7 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_BLS256 | -1.02831880862394 | 1.06400447655897e-09 |
| 8 | WD20342 // leaf // none (control)--/--WD20342 // leaf // 0.5% Na2CO3 solution for 36h | -7.43554568692585 | 9.60047526052959e-06 |
| 9 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA | -1.70983954853397 | 2.51441733464962e-35 |
| 10 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN | -1.25820935776538 | 5.35177282725176e-22 |
| 11 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_B8_12 | -1.02926842391314 | 7.76913845289666e-10 |
| 12 | Nipponbare // leaf // "wild_type,control,2"--/--Nipponbare // leaf // "wild_type,drought,2" | -1.52621578937005 | 4.05976357933213e-08 |
| 13 | Nipponbare // leaf // control--/--Nipponbare // leaf // drought | -1.5263110432128 | 4.31056351607371e-08 |
| 14 | Nipponbare // leaf // "wild_type,control,1"--/--Nipponbare // leaf // "wild_type,drought,1" | -1.52640469197874 | 4.12827574301491e-08 |
| 15 | Nipponbare // panicle // AM--/--Nipponbare // panicle // PM | 1.0493277259347 | 0.00551139917125515 |
| 16 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hA | -1.76687242672788 | 9.57574222205181e-30 |
| 17 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA | -2.12081082987441 | 8.06295268414421e-63 |