Chr:
Chr1
Start:
7706154
End:
7707652
Strand:
-
Ref_name:
LOC107281439
Sequence
(XR_001546950.2):
ACGCACGACCCCCGCGCAGAGCCAAAAGCCAAGAAAAACACGGCAAAAUCCGUGGUGGUAGUAGUAACAUUCUCGGCUCCCCGCGCGCGCGUAGAGCCCAAUCUCGUGGUCGUGGACCGCGGACGCGCGCGCGCGCGCGGCUAAAAUACGUCGGUUUCCGCGUCCUACUACCCACACGUCCAAAUCCCAUUCCUUUUUCUUCAUCUUUCUUUUUCUCCUCUUCUUCUUCUUCUCCUUCUCAUCCUGUGACGACGGCGACGAAGCUACCUGCCGCUGGUGAUGCUGUGUGAUGCUGUGGCUGCUUCAUUAAUUGGGGAAAGUCUGGUGGCCACACAGGUUAUCACACACGGGUGAAGGCUGAAGUGAACAAGCGUCGUGUGUCUCGAAAUACAAAGAGAUAAUGGAAUUGGAAGUAGCUAGAAAAAUUGUGGCAUGACAAAAAUCAAACAAGGGGUAGGUGCGAAAUUAAAGAGAUUAUCGCCUUCCGAGUGCCAGAAAUGUUGGAGAAGAAGUUAGAUACGAUCUACAUAGCCUGUAUAUAAAGGCACAAUGAUAAAGACAUUAUGAAUUAAUUAACUGGGGGAAAAAGGAUAGCUAUGCAUUAAUAUGCAUAUCUAAUUGGCAGCAUAUAGCUCAAUUGCCCAACGUGGGGCACUGAUCUGCUGCAAAUUACUAUUAUAUAUCCCUCUGACUCUAGGGAUUGCAUUGUCACACAUGGGGGCAAGGAUGCAACUGUUUGAACUAUUCAAUCAGAGAGCCAUCACGGAUCGUCUUAUAUAUUCAGGAACACCCGCAUGUGUUCUUGGCUCAGAGCACGCAUGCAUGCAUACAUGCAUGAAUGCUGCAAAUAGAUGUACAUCGAUUGUGAUUCAGCAGGGCAUGCUGUUCAUGUGCCGGAGGCUUGUCGGUCUAGUACAUAAUAAUGUGAAGAUGUAAAUGAUACAUGAUCCGGGAAAUAUAUGUAUGUGUUGCAGAGCUGCAAGAAACAA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
53.25%
ME_num:
MEP:
37.4%
HE_num:
HEP:
9.15%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
shoot_apical_meristem
Tau :
0.87
Avg Expression:
4.63
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hA | 3.88005055577871 | 0.0318389303931045 |
| 2 | Nipponbare // leaf // H2O_control--/--Nipponbare // leaf // Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | -1.62714590621946 | 0.000287082478120239 |
| 3 | Nipponbare // shoot // Drought_during_3_days;_mock_inoculated--/--Nipponbare // shoot // Drought_during_3_days;Fr13_inoculated | 2.89231945962914 | 3.14035582814078e-08 |
| 4 | Nipponbare // shoot // "Control,22C for 10 min, then 30C for 1h50 min"--/--Nipponbare // shoot // "Heat,42C for 10 min, then 30C for 1h50 min" | 2.4724167673216 | 0.00175111206824649 |
| 5 | Nipponbare // panicle // AM--/--Nipponbare // panicle // PM | -2.38942670382816 | 2.63536986493538e-08 |
| 6 | Nipponbare // leaf // Watered;Long_Day--/--Nipponbare // leaf // Watered;Short_Day | 1.68476769674371 | 0.00968204316308401 |