Chr:
Chr1
Start:
21888661
End:
21889886
Strand:
+
Ref_name:
LOC107281430
Sequence
(XR_001546927.2):
CACAUGUCAUUCCCGUUUCCUUCUUCCUCUUCCUCCUCCCUUCCUCUCCCUUCUCUCUCUCUCCCAUCUCUCUUCGUCUUCGUCUGCAGGCAGCGGCGGGCGCUCGAGGGUCCAAGCGGCCGCGGCGGCGAGCGGGAGGGGAGGCAGCAACCCGGCGGCGGCUCGGCGGCAGCAGCGGCGUAGACGGAAGAGGGAGCCAUGAAGGACUCGAGGAAGGAGAAGAGCAUGACCAAUUCGUCCUCCAAGGGCUCGCCGCUGCCGCCGUCCCCGACGCGACGACGAGGCCCACUGUGGUGGCCGCGGUCGCCGCAUUCCUCGAGUCCAGUAGCUUCCCAUGCGCGCUCACGACGCUCCAGUCUGAGGCCAAGCUCGAGUUACGGCGCUAUGGCUCGUGCUGCGCCUUGCCAUUUUCGGCACGCCGUGAAAUGAGAAGAUUUCGCGUGUUCGCAGGUUGAUUCAUGGCGGGCGUCGCCGGUGAGCCUGGAAGAGUUGAUUUCCAUAUUCUUGGACUCGAGAAAUUCUCCCAGUGGGUCACACGCCGCUGCUGCCGCCGAGCCACCGCCUCCCUUCCCGCUCGCCACCGCGGCCUCUUGGACCCUCGAGCGCCCGCCGCCGAUUUUCUCCCUGCAGACAAGACGAAGAGAAAUGGGAGAAAGAGAAAGAGAGAGAAUGGAGAAAAAGGAAGAGGAAGAAGGAAACAGGAAUGACAUGUGGGCCAUACAUGUCAGUGGGUCCCACAUUAUUUUAGUGCGAAUGACAAAUGGGCCCAGCACAUAUUUCUUUAAUUCUAGAACACAAACACCACGUCAACUCCACAUGGACCGAAAACUGAGUCAACAUCAUCAUGUAGGCGCCAUGUUAGCGAAACCGCCCUCCAAAACCAUCAAGAGAGUCAGAUUGUACCGGUUUUAAGAGUUGGAGGUCAAGAUAUCCAGUUUUGUGGUUUAGGGUCACGGAUUAGAUUUCAAUCACUUUUGAGGGUCACAAAGUGAACUUAUUUCCGAUGAGAAAUGUUUCAGAAUAACUCUACAUUACCUUCCUCAACUCAUGCGCAUGGUUGAAUCGCAUACUUCAACCGCAAAAUUGGGUAUAUCUCAUCCUCCAACUCACAAAACCG
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
20.12%
ME_num:
MEP:
64.84%
HE_num:
HEP:
14.84%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
shoot
Tau :
0.75
Avg Expression:
5.34
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dA | 3.47884884148672 | 0.000295674847726183 |
| 2 | Nipponbare // shoot // No_DIS;Fr13_inoculated--/--Nipponbare // shoot // Drought_during_3_days;Fr13_inoculated | -1.73949153971484 | 0.000138882624647981 |
| 3 | Nipponbare // shoot // Drought_during_3_days;_mock_inoculated--/--Nipponbare // shoot // Drought_during_3_days;Fr13_inoculated | -3.07000807355414 | 6.57059596686398e-33 |
| 4 | 9311 // leaf // control--/--9311 // leaf // salt | 1.5617788101481 | 6.48998756469881e-05 |
| 5 | Nipponbare // shoot // No_DIS;_mock_inoculated--/--Nipponbare // shoot // No_DIS;Fr13_inoculated | -1.18813790231915 | 0.0133248907339655 |
| 6 | Nipponbare // leaf // Non-inoculated--/--Nipponbare // leaf // Inoculated with Pyricularia oryzae | 2.09366107759492 | 1.67377174896846e-46 |
| 7 | Nipponbare // leaf // Watered;Long_Day--/--Nipponbare // leaf // Watered;Short_Day | 1.73239011806369 | 0.00564986060312245 |
| 8 | 9L136 // leaf // control--/--9L136 // leaf // salt | 1.75415640240045 | 1.08283385200844e-05 |
| 9 | Nipponbare // leaf // Watered;Short_Day--/--Nipponbare // leaf // Drought;Short_Day | -1.31861076942672 | 0.00281889384900834 |