Chr:
Chr6
Start:
6788456
End:
6789760
Strand:
-
Ref_name:
LOC107281428
Sequence
(XR_001546908.2):
GCGCUCACAGAAGGAAUCAAACUGCUGGCAAAUAGCAAGCCAGUUUGCUCUGGCAUUUCCCUUGUGUGCUAAGUACACAAUAGCUGCUGCAGCAGAUGCCCCCGCGGUCACCAGAGCUAGCAUUGCCUUCACAAGAAUCACAGGAUGAAAGAAGAAACUUAGUGUUCAAAACUGAUAUGCAGUAAACUGGAGAAAGUGAUAAUCUCACCGCAUCGAAAAAGAUCAAGAUGAGCCUGCUAUACUUAGCCCUGCUCCUAAUGACGUGCACAAUUGACAGUGGGAGUGAAAGGAUGAGAUAGGCAGAGACAAUAGAGUUUGCCACCACAAAAAACCUGCCAACAAGAGAUAAAAAUGAUCGAACCAUCAGAUGUCCAUAAGUUAUCUAAAGAAGCAAUGCUAUCAACUAUUGAGGAGGCUUCUGCAAGUACGUGAGAGUUGGGAGAUCGCUGUAUUGCGCCUUGAACCGGAUGAACUGGGUGAAGAAAGGCAGCGUCUGAUUGGUGGUGCCCAUGGCAAUGGCACUCGCGAGGGUGCCAAUGAUCGCGACAAAGCGAAGUAUAACAUCGAGUAUAGACACUCCUUUACUGACCCCCCUGCUCAGGGGUGCCUUUGAGGUCUCACCAUGCUCCUCAGACCCUUCCAUGGUAAUGUGCGUGGAUUAGGUCCGUUGAUGCCAGAGCAGGUGGCCGUGCAGGAUUUGUGUUGAUACGUACUUCCAGGAGCAUUUCGGCUGGUAACUACUCCAAUUGCCCCAAGUAGACCAAUUGCAUUGUUUCAUGCAGGGUUUGUGGCCUCUUGGCCCUCUUUACACCAGUGGACUACUGAACUUCCACUGAACACGGGACUGGCUUGUGUCAUGGCUAUGCGUCUUGUUAUGCAGGAGGCUUCAACUGAACGUUCGUUAGCUCGUUCCAACUACAAAAAAGGCAUUGAUACACACUGUUGCAAGUCAUUUCAUAAGAUGCAGGGAUAUCUGCUAUUCUGUCUGGAGCUUCUCUUUCGUUGUGAAGCAAGUUGGGUUGGUGUAUUAUUAUUUCCUGCCCCUGCCAACUCAAAGAAACAUAUAUGGCUACACCUACACACUCAGCUGUAAUGCAUAGCGCUACCACUUCCCUUUUAAGCUGA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
7.93%
ME_num:
MEP:
89.43%
HE_num:
HEP:
2.44%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
callus
Tau :
0.51
Avg Expression:
3.88
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dA | -2.22351678514595 | 0.000456173487302847 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hN | -1.15451847338824 | 0.00723876244096582 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN | -1.07703506736625 | 0.0169610217737347 |
| 4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN | -1.44180346578328 | 0.0109484497682765 |
| 5 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA | -2.14725677202643 | 0.000122487058143128 |
| 6 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hA | -1.13779709238421 | 0.00509568369215597 |
| 7 | IR64 // panicle // Dawn--/--IR64 // panicle // Dawn + 10.5h | 1.33874695834291 | 0.0100337562145637 |
| 8 | IR64 // panicle // Dawn--/--IR64 // panicle // Dusk | 1.13348968400863 | 0.0403869876867801 |
| 9 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 3hA | -1.04438484085377 | 0.0326023076437963 |
| 10 | Nipponbare // shoot // "Control, 22C for 10 min, then 30C for 50 min"--/--Nipponbare // shoot // "Heat, 42C for 10 min, then 30C for 50 min" | 2.01543216791541 | 0.00485004844952196 |
| 11 | Nipponbare // shoot // "Control,22C for 10 min, then 30C for 10 min"--/--Nipponbare // shoot // "Heat,42C for 10 min, then 30C for 10 min" | 3.15650898059387 | 1.92688750303041e-05 |
| 12 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA | -2.01803024064936 | 1.55001397090558e-05 |
| 13 | Nipponbare // shoot // "Control,22C for 10 min"--/--Nipponbare // shoot // "Heat,42C for 10 min" | 2.43295578031635 | 0.0141128766449655 |
| 14 | Nipponbare // panicle // AM--/--Nipponbare // panicle // PM | -1.49462030922609 | 0.0270998170660857 |
| 15 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hA | -1.0767701426593 | 0.029583651067785 |
| 16 | Nipponbare // leaf // Watered;Short_Day--/--Nipponbare // leaf // Drought;Short_Day | -2.23687330371676 | 5.35380394455794e-06 |
| 17 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA | -2.11170545387408 | 1.29209719553365e-06 |