Chr:
Chr6
Start:
19853366
End:
19856961
Strand:
-
Ref_name:
LOC107281424
Sequence
(XR_001546885.2):
CCCGCGAUUACUACGCCGCACUUCCGCCCGCAAAUUGUUUUCUUCGACAAAACUGCCGCCUGCCCUCCACCCCACCGGUGGCCGCGCCUUCCUACCACCGGCACCAUCGGGCACACCUCCCUUCCCCUGGUGGCUGCGCCUCCCUACCGCCGCCGCGGGCGCCGUCGCCUGCCCCUCAAAUUCCGCCGGUGGCUACGCCUCUCUACUGCCGGCGCCGGCGCCGUCGCCUGCCCUCCAACCAGUCCGCGCCUCACCGCCGCCAGCGCUGGGGCUCCACCCCGCACGUGCCUUCCCCACCGCCGGUGCCCUGAGGUGCAGCCGGGAAGAAGCAUCCGAUGCAGGAAUUAAGAGCACAAGACAACGAGAUGAUGGAAAGCAACACUGUCUACUAGAUGCAGUUUGUUAACAGUGAGUAUUUCUUUGGUGAAUUUAGUUUGCACUGAAGAACUGCACAUGCGAAGGAGGGAUUAUUGUCAUGUGUCAAGGUUAGGGAUUAUGGUCACUUUUUUUCUCAUAUAUAUGCACUAUCGUCUUGUUCUUGCGAACACGGUAUCUGCACUAUUUUCAUUGAAUCUUCUAGCCCAUGCAAAACAGAAUGUUGGUAUAUGCCAGACACACUACUAUCCAUAAUUUUGCCAUUGUUUAUUGGUCAACUUUUUCCAUGAUUGAUAGAAUUCAAUUCCAUAUCUUUUUUAUCAGCACCAACAUUAGCUUCAUUCCUUAAUUAUUUUCUACUUGCAUUAGAAAGGGGACUUCAGAUCAUGUAGGCCAAUCCUAUACAUUGGCUGAGCACUCUCUUCAAAAGGAAGAAUGUGAUCACAAACAACAAUCUGGGCAUGACCUUCUACCAAUGUAUGAAUACUAAUUGAAUAUUUGAUUUUUUUUUCUUCACAUACACUAAUUGAAAUACUACUAGCAAGAGAGCUAUAUAUAAUACAGUAAGGUGGUUGUUCAUCACAAAUGAAAGUCAAGGAUGGUUAUUUAGCAAAAUUAUUUCCGCGUUGAUCUGGCCCUUCAUAUUUCUACUGCUUAUACUGUAUAAAUGGCAUUUUUACAUGAUUUUAUUAACUAUAUUAUUGCUGUACCUAGAAGUUAUGUAAUGUGAUUCAUUUGUGAAUGACAGAAAUUACGAAAUAUGGAAACUGUUGUUUGAUGUUUUCUCAUACAGAGCCAUAUGCCAAUUAUUGUCUAUCCAAGCGCAUGUUGUUAAUUCAUUCUAAGAAUUAUUCCUUCUGCCUGACCAUUCUGAUCUUUUCUUACUAUAUUGAGAUACAGGCACAUCACGCCUCUAUUGCAAAAUUGUGUCUGUGUGUUUUUAAUCAGUCCAUCUUUUGCCAAAUUGAGAUACAAGCGUUUUUUUUGACCUUUUCCCACUUGCAGCCAUCCAACUAGCUAACAACGACAGCACAUUUUGGUACCUCUUUUUGGCUUGCUGCUUGGCAGCUACAUUUCGAUUUGUUAAAACAAAUUCAGCUACAUUUGGCAGGUUCCUUUCAUUAUGAUCACGAAAACUCAUGGAUCUGUUGAAUUGUUCUACAAUCUGUCCUUACCCACAAGGAUACUUAAGGUGUACACUGAUCCCCUAAAUCAUACUGUCGGGUACUAAGAGAUCCAUAUUCAGGGUAUGUGGAUUUUUUUUUCUUCAGUUUUUUGUUUUUAUUUUUGCUUCCCUUUGUUCUGCCAAAUUCCAAAAUAAAGAACGCAUUUGAGCUA
Sequence
(XR_003242882.1):
CGCGAUUACUACGCCGCACUUCCGCCCGCAAAUUGUUUUCUUCGACAAAACUGCCGCCUGCCCUCCACCCCACCGGUGGCCGCGCCUUCCUACCACCGGCACCAUCGGGCACACCUCCCUUCCCCUGGUGGCUGCGCCUCCCUACCGCCGCCGCGGGCGCCGUCGCCUGCCCCUCAAAUUCCGCCGGUGGCUACGCCUCUCUACUGCCGGCGCCGGCGCCGUCGCCUGCCCUCCAACCAGUCCGCGCCUCACCGCCGCCAGCGCUGGGGCUCCACCCCGCACGUGCCUUCCCCACCGCCGGUGCCCUGAGGUGCAGCCGGGAAGAAGCAUCCGAUGCAGGAAUUAAGAGCACAAGACAACGAGAUGAUGGAAAGCAACACUGUCUACUAGAUGCAGUUUGUUAACAGUGAGUAUUUCUUUGGUGAAUUUAGUUUGCACUGAAGAACUGCACAUGCGAAGGAGGGAUUAUUGUCAUGUGUCAAGGUUAGGGAUUAUGGUCACUUUUUUUCUCAUAUAUAUGCACUAUCGUCUUGUUCUUGCGAACACGGUAUCUGCACUAUUUUCAUUGAAUCUUCUAGCCCAUGCAAAACAGAAUGUUGGUAUAUGCCAGACACACUACUAUCCAUAAUUUUGCCAUUGUUUAUUGGUCAACUUUUUCCAUGAUUGAUAGAAUUCAAUUCCAUAUCUUUUUUAUCAGCACCAACAUUAGCUUCAUUCCUUAAUUAUUUUCUACUUGCAUUAGAAAGGGGACUUCAGAUCAUGUAGGCCAAUCCUAUACAUUGGCUGAGCACUCUCUUCAAAAGGAAGAAUGUGAUCACAAACAACAAUCUGGGCAUGACCUUCUACCAAUGUAUGAAUACUAAUUGAAUAUUUGAUUUUUUUUUCUUCACAUACACUAAUUGAAAUACUACUAGCAAGAGAGCUAUAUAUAAUACAGUAAGGUGGUUGUUCAUCACAAAUGAAAGUCAAGGAUGGUUAUUUAGCAAAAUUAUUUCCGCGUUGAUCUGGCCCUUCAUAUUUCUACUGCUUAUACUGUAUAAAUGGCAUUUUUACAUGAUUUUAUUAACUAUAUUAUUGCUGUACCUAGAAGUUAUGUAAUGUGAUUCAUUUGUGAAUGACAGAAAUUACGAAAUAUGGAAACUGUUGUUUGAUGUUUUCUCAUACAGAGCCAUAUGCCAAUUAUUGUCUAUCCAAGCGCAUGUUGUUAAUUCAUUCUAAGAAUUAUUCCUUCUGCCUGACCAUUCUGAUCUUUUCUUACUAUAUUGAGAUACAGGCACAUCACGCCUCUAUUGCAAAAUUGUGUCUGUGUGUUUUUAAUCAGUCCAUCUUUUGCCAAAUUGAGAUACAAGCGUUUUUUUUGACCUUUUCCCACUUGCAGCCAUCCAACUAGCUAACAACGACAGCACAUUUUGGUACCUCUUUUUGGCUUGCUGCUUGGCAGCUACAUUUCGAUUUGUUAAAACAAAUUCAGCUACAUUUGGCAGGUAACUCCAAAAUAUUCUGAUUAGGGAAAAAAAGAUAGCUAAUGCAGUUACUUGUCAACAUACCCUCAUGUUACUUUAUGAAAUGCAAGUGCCAUGGAAAGGUUAUAUUCGAAGUUAUAGCCAUGUAUGUGCGUUGUAUUUUCUCACAUUUAUCUUACUUUCAUCUGAUAUACAUAAGCACUAUAUGUUCCUCCACUUAUCUGUUUACUAUCUCUUUCAACCAGUUUUUCACUAGCAAAGUUCUUUGCAAGUAAUUGCUUUGUAAUCUGUAUUGUGCGUUGUUACGUAAGAAAGGAUAAGUGGAUGAGAAUACAGUUGUAUAUAGCACAAACACAAGUAUCGGGGAUUUGAUGUAUAUACUGUUUAGAUCA
Sequence
(XR_003242883.1):
CGCGAUUACUACGCCGCACUUCCGCCCGCAAAUUGUUUUCUUCGACAAAACUGCCGCCUGCCCUCCACCCCACCGGUGGCCGCGCCUUCCUACCACCGGCACCAUCGGGCACACCUCCCUUCCCCUGGUGGCUGCGCCUCCCUACCGCCGCCGCGGGCGCCGUCGCCUGCCCCUCAAAUUCCGCCGGUGGCUACGCCUCUCUACUGCCGGCGCCGGCGCCGUCGCCUGCCCUCCAACCAGUCCGCGCCUCACCGCCGCCAGCGCUGGGGCUCCACCCCGCACGUGCCUUCCCCACCGCCGGUGCCCUGAGGUGCAGCCGGGAAGAAGCAUCCGAUGCAGGAAUUAAGAGCACAAGACAACGAGAUGAUGGAAAGCAACACUGUCUACUAGAUGCAGUUUGUUAACAGUGAGUAUUUCUUUGGUGAAUUUAGUUUGCACUGAAGAACUGCACAUGCGAAGGAGGGAUUAUUGUCAUGUGUCAAGGUUAGGGAUUAUGGUCACUUUUUUUCUCAUAUAUAUGCACUAUCGUCUUGUUCUUGCGAACACGGUAUCUGCACUAUUUUCAUUGAAUCUUCUAGCCCAUGCAAAACAGAAUGUUGGUAUAUGCCAGACACACUACUAUCCAUAAUUUUGCCAUUGUUUAUUGGUCAACUUUUUCCAUGAUUGAUAGAAUUCAAUUCCAUAUCUUUUUUAUCAGCACCAACAUUAGCUUCAUUCCUUAAUUAUUUUCUACUUGCAUUAGAAAGGGGACUUCAGAUCAUGUAGGCCAAUCCUAUACAUUGGCUGAGCACUCUCUUCAAAAGGAAGAAUGUGAUCACAAACAACAAUCUGGGCAUGACCUUCUACCAAUCCAUCCAACUAGCUAACAACGACAGCACAUUUUGGUACCUCUUUUUGGCUUGCUGCUUGGCAGCUACAUUUCGAUUUGUUAAAACAAAUUCAGCUACAUUUGGCAGGUAACUCCAAAAUAUUCUGAUUAGGGAAAAAAAGAUAGCUAAUGCAGUUACUUGUCAACAUACCCUCAUGUUACUUUAUGAAAUGCAAGUGCCAUGGAAAGGUUAUAUUCGAAGUUAUAGCCAUGUAUGUGCGUUGUAUUUUCUCACAUUUAUCUUACUUUCAUCUGAUAUACAUAAGCACUAUAUGUUCCUCCACUUAUCUGUUUACUAUCUCUUUCAACCAGUUUUUCACUAGCAAAGUUCUUUGCAAGUAAUUGCUUUGUAAUCUGUAUUGUGCGUUGUUACGUAAGAAAGGAUAAGUGGAUGAGAAUACAGUUGUAUAUAGCACAAACACAAGUAUCGGGGAUUUGAUGUAUAUACUGUUUAGAUCAUGAACAUUUAAGUUUUGAACAGGUU
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
17.07%
ME_num:
MEP:
57.93%
HE_num:
HEP:
24.8%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
shoot
Tau :
0.73
Avg Expression:
8.23
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hN | 3.61384077133155 | 1.77452000661138e-07 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hN | 3.41383773639254 | 9.70938166449094e-07 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN | 2.48268049049779 | 0.000981697569487793 |
| 4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dA | 2.39142717842559 | 0.00955997415477011 |
| 5 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN | 3.37031595000425 | 2.84207426112195e-06 |
| 6 | Vialone_Nano // leaf // control--/--Vialone_Nano // leaf // 100 mM NaCl | -2.71509406469465 | 1.14281115022364e-12 |
| 7 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hA | 2.43918611506788 | 0.00144831977641706 |
| 8 | Nipponbare // leaf // H2O_control--/--Nipponbare // leaf // Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | -2.47910269459006 | 4.33539789480441e-05 |
| 9 | IR64 // panicle // Dawn--/--IR64 // panicle // Dawn + 17.5h | -1.75356346262551 | 0.0144934551740239 |
| 10 | Nipponbare // leaf // wild_type_plus_1hr_shade--/--Nipponbare // leaf // wild_type_plus_1hr_white_light | 1.59869768572826 | 0.000370681910553052 |
| 11 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_BLS256 | -2.47226817526127 | 3.6401011990913e-14 |
| 12 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_CFBP2286 | -1.70467525684608 | 0.00871990598681447 |
| 13 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_BLS279 | -2.32285119994635 | 1.92819128597339e-06 |
| 14 | Baldo // leaf // control--/--Baldo // leaf // 100 mM NaCl | -1.15649664958634 | 0.00694771483291581 |
| 15 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN | 3.30409615315874 | 5.21023526440084e-07 |
| 16 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_L8 | -2.03866802789716 | 0.00294972096719477 |
| 17 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_B8_12 | -3.1453965750187 | 1.57879769549113e-17 |
| 18 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_RS105 | -2.53764915368091 | 4.71942023072979e-07 |
| 19 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_CFBP7341 | -2.71393785641132 | 4.22503682198029e-15 |
| 20 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_CFBP7331 | -1.74608232696243 | 0.0349307323384305 |
| 21 | Nipponbare // leaf // "wild_type,control,2"--/--Nipponbare // leaf // "wild_type,drought,2" | -3.31967772945256 | 1.60864192487785e-06 |
| 22 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_CFBP7342 | -2.54861888631193 | 2.50983314999561e-10 |
| 23 | Nipponbare // leaf // control--/--Nipponbare // leaf // drought | -3.3197309384168 | 1.63394410532463e-06 |
| 24 | Nipponbare // leaf // "wild_type,control,1"--/--Nipponbare // leaf // "wild_type,drought,1" | -3.31981128786503 | 1.61716901499403e-06 |
| 25 | Nipponbare // leaf // Watered;Long_Day--/--Nipponbare // leaf // Drought;Long_Day | -2.67999327365415 | 1.2530900081709e-06 |
| 26 | Nipponbare // shoot // No_DIS;_mock_inoculated--/--Nipponbare // shoot // No_DIS;Fr13_inoculated | -1.8614749126089 | 0.0450170511597341 |
| 27 | Nipponbare // leaf // Non-inoculated--/--Nipponbare // leaf // Inoculated with Pyricularia oryzae | -1.59948487219076 | 2.32131828513682e-07 |
| 28 | Nipponbare // panicle // AM--/--Nipponbare // panicle // PM | -2.58210001698783 | 2.02605462956008e-18 |
| 29 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hA | 2.64341113194262 | 0.00104380795098901 |
| 30 | Nipponbare // leaf // Watered;Short_Day--/--Nipponbare // leaf // Drought;Short_Day | -1.78745720120847 | 1.84836318072422e-07 |