Chr:
Chr6
Start:
12351537
End:
12352165
Strand:
-
Ref_name:
LOC107281422
Sequence
(XR_001546882.2):
CAUUUUCUCUAUACUAUUUUUAUUUUGUAUAUUGUGAUUUACGUUUACAAAACUGUCAAAUGGAGUAUAUAAUUAUAUCUUAUUUUUAUCAUGCGUAGGGACGACACGGGGUGCCAGGUGGGUACCGGCUUACCCAGAAAAUAUGAAAACAAUAUAUGGGUGCCUUGUUGAAUAAAUACUAAGGUUUUCUCCUUUCUCGUGAUGUCAUGGCAAGGCGGCACCGCGGCGGCAUGAGCAUGGCGCAUUGUCCUCGAGAUGGCAAGGCCACAGUGGUAGCCAUAUAGUCGGCGGAGGAGCUGGCACUUAGGUGCGCCGGACGGAGGUGCAGCACACCGCCAUGGUUGAUCCAGUUCAAGCAACCGCAAGGCAACCAUGGGCAACGAGCACUCCAAGUAUCCAUCUCCAGGCAUUCAAUGCCCAGCAUUCCAGUCUCUAUGUACAACAGUUCAGAUUCAGUAUUUCACUUUGAGUAUUCGAUUGAAAAGUUGAAAAAUGGAGUGAGUUCAAUUAAAUGACGGUGCAA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
62.6%
ME_num:
MEP:
35.77%
HE_num:
HEP:
1.42%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
shoot
Tau :
0.81
Avg Expression:
1.64
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN | -5.3242306963675 | 0.00242874627300724 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN | -3.61742498918098 | 0.0467815474700386 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA | -4.75699699747539 | 0.0105752528367934 |
| 4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA | -3.36452861795417 | 0.0269484039576127 |
| 5 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN | -4.63324249750772 | 0.00619612603461998 |
| 6 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hA | -5.03926241245627 | 0.00546838549933883 |
| 7 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA | -5.73647698307529 | 0.000636596647367958 |