Chr:
Chr6
Start:
16792266
End:
16796290
Strand:
+
Ref_name:
LOC107281413
Sequence
(XR_001546832.2):
UGAUGAUCUGCUUCAUCCAAUCAUCCAUCAUCCAAUCCAGGCAUCUAGCCCUCUUUUCUUCUUUAAUUCCUCUCCAUCCAAACAGUUGUUCUUGGCAUGCACACCCAUCACCCAUGAUUAGAUCAGAUGUUCAGAUCAGUUCCUCUCUUUUUUUUCUGGAUACAUGCAUGCAUGCAUACAAACACACCACACCAUCUGAUUUCAAGCUUUUGUAUCCCUCCUUCAUCAUCUAUCAUUCAUGCUUUCUCCUUUUGUUUCUCAUGCUGCUGGUGUCCACUGAAUUCUUCCACACAAAAGCUGGCCAUUCAAAGCUUUUUCCCUCCUUUUUCUUCCUCACCUCUUUAUUGAUUAUGUCUAAUUUUUGCCCUAUCCUCUGCUGCAUCAGCAGCACAGCCUCACACACACUACUAGUACUAAAUUGCAAAAGAAAGUGAUUGCUUUCGCACACAGCCUCCUCCUCCUCCUCUCGUCUCCUACUGCAGCUCACUGCCUUCCACUCAUGGUCACCUCCUCAGCUCAGAGUGGUCGCUUGCACUUACAGCAUCAGCAUCACCGAGAAUAAUGGCGGCGACGACGGCGCCCUCGUUGCCAGGGUACGAGGUGUCCGGCGCCGCCGCCGCGGCGACCCGGCUUCACGGCUCGCCGGGGUCGGUCGGCGCGUUCUUGGCGGUGCUCGCCGCCGUGGUGGCGGUGACCGUCCUGUCCUGCGUCGUCGGACAGGCGUGCGCGGCGCGGGCCGAGGGGCCCGACGAGCGGUACGACUGCGCGGGGCUCGCCGGCCGGAGAUGGUGGCUGCGGCGGUGGCGGCGGGAGCCUCGCCGGCCGGUCAGGCCGGCGGCGGAGGAGGAGGUGGAGGUGAAGCAGCCGGCCGCAUAGCCGGUGCCGGAGCCGUGACCACGAGACACGCUUGCAGGUGAAGAUCGACAACAUAUAACUGAAGCACAUUUCAAAGCAAGAUCCAAGAACUUAAACUUGACAUCAUCUUCCAAGGCAUAUGUUAAAGAUUUACCAUCAAUGAUCAGUGCAAAGGAUUCAGUAUUUGAUUGACUUGGGGGUGGAAUCUGUUUGAUUCCAUCCUCUAUUUGAUCCAUUACCCUUUGCUUUGAUUCCUGGAGAGCCAAUAAAGAGUAAACUAUCAAGAUUUUAAAUUUCUAUUACAACGUGUAUAAAUAUAACUGCCUGUUUCGUUACACCUACAAUUUUUUUCAACAUUUGGGCGCUCUUGGAGAGAAUAUUAUCAUCCCAAAUUACAGUUCUUCUAUAAAUAAAACACUUAAUAUCUAAUGAUUCAAAAAAUAAUGGUAAUGCAAUGAUUUACCCACCCU
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
14.02%
ME_num:
MEP:
77.24%
HE_num:
HEP:
8.54%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
2nd_leaf
Tau :
0.69
Avg Expression:
4.09
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN | 1.85760099054373 | 0.0145001326035537 |
| 2 | Nipponbare // leaf // H2O_control--/--Nipponbare // leaf // Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | -1.90416135081522 | 0.00521215386624374 |
| 3 | Nipponbare // shoot // Drought_during_3_days;_mock_inoculated--/--Nipponbare // shoot // Drought_during_3_days;Fr13_inoculated | -2.11387545629322 | 0.0001082753091093 |
| 4 | Nipponbare // leaf // "wild_type,control,2"--/--Nipponbare // leaf // "wild_type,drought,2" | -2.57335478129693 | 0.00654792626518683 |
| 5 | Nipponbare // leaf // control--/--Nipponbare // leaf // drought | -2.57344430598109 | 0.00670401699825443 |
| 6 | Nipponbare // leaf // "wild_type,control,1"--/--Nipponbare // leaf // "wild_type,drought,1" | -2.57352712958369 | 0.0065650358222325 |
| 7 | Nipponbare // leaf // Watered;Long_Day--/--Nipponbare // leaf // Drought;Long_Day | -2.04434948068345 | 8.75458405926338e-07 |
| 8 | Nipponbare // leaf // Non-inoculated--/--Nipponbare // leaf // Inoculated with Pyricularia oryzae | -1.64995709058662 | 0.00409936094518051 |
| 9 | Nipponbare // panicle // AM--/--Nipponbare // panicle // PM | 1.09177481491553 | 0.0177974443287274 |
| 10 | Nipponbare // leaf // Watered;Long_Day--/--Nipponbare // leaf // Watered;Short_Day | -1.02282401116423 | 0.045760893124277 |