RiceNCexp
Rice Non-coding RNA Co-Expression Atlas

OSA-LNC107281407

Function Link

Tissue-specific Expression analysis
Differential Expression analysis
Co-Expression Curve
Network analysis

Basic Info

Chr:

Chr6

Start:

25949718

End:

25952626

Strand:

+

Ref_name:

LOC107281407

Sequence
(XR_001546757.2):

CGGACGGGACAGUGUCGUUAUCGCGAAGCUGUGCAGUGCGACGCUAUGCGAUGCGGGGCUACGUGAUGCAGAAGCGGCUAAUUUAAUUUUUGGAUCUACCUCUGGUUACACCUCCGGAAGAAAUGGUACACAUAGUAAACAGUACACACAGCCAGGAAUUCCAAUGUUCUCGUACAAGGUGAAACCGUACGUGAAAUGACCAGAUUGGUUAGCAUCUGGGUCCUCAGGAAUAAAUGGAUCAUCCAUGCAAUUAAUGGAGAUUUUUCCCAUAUGGAUGAUGGAAUCUUAACUGCACGAGGCCCCUCACAAAGGAGAGAUACCAGUUGUCACAUUACUGUGCAAACAGGCUGCAAUGUGGUACCUGUUGCCCCCCCCCCCCCAUAGGGCUUCUUUGUAAUAACAAAGAAAAAAUAGAGGGGAUUCCUAUAGAAAUAAUUGAUAUAUGGUCUUUGGAAAA

Sequence
(XR_001546758.2):

GUUUUUUGGGCAGCGGACGGACGGGACAGUGUCGUUAUCGCGAAGCUGUGCAGUGCGACGCUAUGCGAUGCGGGGCUACGUGAUGCAGAAGCGGUAGGCUAAUUUAAUUUUUGGAUCUACCUCUGGUUACACCUCCGGAAGAAAUGGUACACAUAGUAAACAGUACACACAGCCAGGAAUUCCAAUGUUCUCGUACAAGGUGAAACCGUACGUGAAAUGACCAGAUUGGUUAGCAUCUGGGUCCUCAGGAAUAAAUGGAUCAUCCAUGCAAUUAAUGGAGAUUUUUCCCAUAUGGAUGAUGGAAUCUUAACUGCACGAGGCCCCUCACAAAGGAGAGAUACCAGUUGUCACAUUACUGUGCAAACAGGCUGCAAUGUGGUACCUGUUGCCCCCCCCCCCCCAUAGGGCUUCUUUGUAAUAACAAAGAAAAAAUAGAGGGGAUUCCUAUAGAAAUAAUUGAUAUAUGGUCUUUGGAAAA

Expression Capacity

HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.

HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.


NE_num:

1

NEP:

0.2%

LE_num:

396

LEP:

80.49%

ME_num:

95

MEP:

19.31%

HE_num:

0

HEP:

0.0%


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Type:

MCR ()

Tissue Specific Expression

cutoff: tau > 0.9 and Average expression in the tissue > 10


Tissue :

root_elongation_zone

Tau :

0.80

Avg Expression:

0.90

Tip: OSA-LNC107281407 is not a tissue-specific expression ncRNA.

Differential Expression

cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01


Num. Condition log2(FoldChange) Padj
1Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 3hA2.587911173112160.0458056998545335