Chr:
Chr6
Start:
27953363
End:
27956701
Strand:
-
Ref_name:
LOC107281402
Sequence
(XR_001546736.2):
CGCGAGCCGACACAGUGGCAUCUCCCACUCCUCCCCCUCCCCCCUCUCGCCGCCGCCCAUCGCGGAGACCUCCCCCGCCGCGCCGCCGCCCCUCCCCCGCCUCGUCGUCUCUCCGGUGACGGUGAGCCCCUCGUUCACCGCGCGACCGAUUCGAUUCGAUCUCCGCGAGGCUCACCCCACGCACGGUCCUCGUCAAGAUGCUGAUGCACAACGUGCACCACCUCCGUGGUGGCCAGCUUGUUGAUCUCAACAGGGUGAAUGCAGGCCCUGACCAUAACCGCGGGGUGCCAGCCAAUGGUGCCCAUCAGUUUAAUUGGUCAGGGUUCAGUCUCAUGCUGUUCGGUGCAGCCCCGAUGAUGGUUUUGCCUUGGCAGGUGGUACAUGUGCCGUGGCCUCUGCUGCUUCUUGCGUUGAUGACCUGGUUCAUCGGCUGCCUCAGGCUCUACGGUUUUCAAAUCGCUUUUCCUGUAUAUUAUCAUCAGCACGGUGGCAACAACAGCCAAGGUGUAGCAGCGCCAGCAAGCACAGGACGUUAAGACACAUACCACUAAUUCUUUUGUUGCAAACCAUCCUAUAAAAGCAGGGAAUGGAUCAACCAUGACUUGUUGAAAAUCUAGACCACGGGAUCUGAUAUAUUUUCCUAAUUCACAUAUAAUUGGUUUUAUUCUUACAUAACUCGUGUGUGCUGCCCUGAAACCCUCAGUGUCAUGUUCAUGCCAUAUGGGAUCCCAUGCGAGUAAACAGUUUCACACACCAUUCACAAAUUGGGUUGUGGGUGUAACCAUACAAAACUUACAUUACUCUUGCAACGUGCAGGGAUGGAAUGGUGAAUAAUGCAGAGAUGGAGGAGGAGAACGCCAUUCCGGAUGAGGGCAGUCUGGCCUGGAGCGGCUACGCCCUGAUGGUCUUAUCAGUGUUGGCAUUGUGGUCUGGCUUGGUCACUGAACCGGUGGCGGUCUUCCUGUCCUUCCUGCUUCUGCUGCUUGGGUGCGGCUUUCUUCACCUCGCCAUGCUCGCACCGUCCAAGCCCAAGAUGUUCUGAUUGAUCACAAGCAAUUCCAACACGGGGCGAUUAUAAGAAUUUUUGGUAUCGUGUGUUUAUAGGUUUGUGCGUGUAUGGUAUAUUGGUAUGUGCUUCAUAGAACACCAAUCAUGUGUAUAUAUAUUUAUAUGAGUAAAGUGUAUUGGCGGUCCUUAAACUUGUAGGAUUAUGACAUAUAGGUCCCUAAACUCUUAAAAUGCAUAUUCAGAUUCCAGAAUUUGUCAAAGUGUAUCAUCUAGGUCCUAAAUUGACAUAUCCUCUUUAGGAUCAUAUGUGACACUGAUGUGGCAAUGCCACAUGGACUUGACGUGUCCUUUUCUUCUUCUU
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
0.2%
ME_num:
MEP:
10.77%
HE_num:
HEP:
88.82%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
caryopsis
Tau :
0.68
Avg Expression:
33.72
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
Num. | Condition | log2(FoldChange) | Padj |
---|---|---|---|
1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 3hA | 1.58462013274538 | 4.06322097590988e-15 |
2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA | -1.22134383218189 | 7.67278461586982e-05 |