Chr:
Chr1
Start:
29213331
End:
29214409
Strand:
-
Ref_name:
LOC107281401
Sequence
(XR_001546732.2):
CCAAUCUUAUCCCUUCCCAUUCACCUCUCCCAUUCCUUCUCUUCCUCCUGCAGCCUCUCCACCUCCUGUCCUCCUCCAGCCUCUCCUCCUCCUUCUCCUCCACCUCCUCCUCCUCCUCCUCCUGUCGGAGUAGGAAACCACGGCGGAUUAGCGACGGUGACGACGGCGACCGGGAGGGGCGCCGUGAUCCACGGCCGGGAAGGGCACGGGCGCGGGUGCAGGCGUGGCGGAUCCGGCCACCGCAGAGCCGCGGGCGGCGGAUCCGGCCGCCGGAGGGCCGCGGGGAGCGGAUCGGGGCGCGGGCGGCGGCGCGCGGCUGAUCCGGGCAAGGGCGGCCGCUCUCGGACGCCGGCGGCAGUGCGCGGCGGAUCCAGGCGCGGGCGGCGGCUCUCAGGCGCUGGCAGGGAGGCUAGAUCCGCCGCCGCUAGAUCGGUGGCGCCUGGCCGGUGGUCACCGGGGAGCUGCAUGCUAGCUGCAGAGAGGAGGCACGACCGCACGAGAGGAUCCUCUCUUCAGUUCAUGCGUUUGGUUCUGAUCUGUUUGCACGUGAAACCAUUUCUGCAGCGGGGCUCUGUGCAGCGGCGGAGGCCGGCGGGGCUCGGCAGCGGCCUCGUCGAGGCGGAGGCAGUGGAGGCUUGAAUGCUUGAAUUUUUUUGAUGCUUGAAUGCUUGGGGGAAUAGAAAUUUUUGACUGUAAAUUUAAAUUGUGCUUGUGUGAAUUGAAUUUUUUGACUAAUUUUUGCUUGGGUGAAUGGAAAUUUCUGUGGAUUUUUGAAUGGUGGAGCGUUGAUUUUUUUUUUAAACUUGGCCAGGAUUAACACUGGCGGCUGACACAGUGUUACCCGCCAACGAAAAAAUAUUUUCGCUGGCGGCCAUCUUAAGCCAGCCGCCAGUGAAAAUGGAUCUUUGCUGGCGGUUGGGCUUAAGACAACCGCCAGCGAAAAUGAAUUAUCGCUGGCGGCCAAAAACCGCUAGCGAAGAUUGUGAUUUUCA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
3.05%
ME_num:
MEP:
75.41%
HE_num:
HEP:
21.34%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
pistil
Tau :
0.56
Avg Expression:
6.51
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Caidao // leaf // none (control)--/--Caidao // leaf // 0.5% Na2CO3 solution for 36h | 1.8427583397313 | 0.0134755331293545 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hN | -1.39925888727642 | 0.0259526394223521 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA | -2.1597628486085 | 0.00604010608389451 |
| 4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hA | -1.22095272518199 | 0.039624253636227 |
| 5 | Nipponbare // shoot // Drought_during_3_days;_mock_inoculated--/--Nipponbare // shoot // Drought_during_3_days;Fr13_inoculated | -1.42498165597246 | 3.76329807761832e-08 |
| 6 | Nipponbare // shoot // "Control,22C for 10 min, then 30C for 1h50 min"--/--Nipponbare // shoot // "Heat,42C for 10 min, then 30C for 1h50 min" | 2.74210128257934 | 4.54064831170021e-11 |
| 7 | WD20342 // leaf // none (control)--/--WD20342 // leaf // 0.5% Na2CO3 solution for 36h | 3.0401969380279 | 4.18027490413572e-05 |
| 8 | Nipponbare // shoot // "Control, 22C for 10 min, then 30C for 50 min"--/--Nipponbare // shoot // "Heat, 42C for 10 min, then 30C for 50 min" | 3.50546830331194 | 2.25889386707391e-35 |
| 9 | BR-IRGA_409 // spikelet // control condition (29C) for 7 hrs--/--BR-IRGA_409 // spikelet // high temperature treatment (38C) for 7 hrs | 1.46072628671069 | 0.0326664914452889 |
| 10 | Nipponbare // shoot // "Control,22C for 10 min, then 30C for 10 min"--/--Nipponbare // shoot // "Heat,42C for 10 min, then 30C for 10 min" | 1.49021082808737 | 0.00352490903104551 |
| 11 | 9311 // leaf // control--/--9311 // leaf // salt | 1.10247563473795 | 9.60156470907925e-05 |
| 12 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA | -1.99230345322095 | 0.00564792718686485 |
| 13 | Nipponbare // shoot // No_DIS;_mock_inoculated--/--Nipponbare // shoot // No_DIS;Fr13_inoculated | -1.0473492803966 | 0.0216176579096322 |
| 14 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hA | -1.8488843377316 | 0.0130561549920146 |
| 15 | 9L136 // leaf // control--/--9L136 // leaf // salt | 1.02672656886908 | 0.0023505157378539 |
| 16 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA | -1.76531207373392 | 0.00142649879392946 |