Chr:
Chr6
Start:
27506764
End:
27508902
Strand:
+
Ref_name:
LOC107281376
Sequence
(XR_001546698.2):
UUUGGUCCUGAGUUUUCAAAGACCGAACUGACCGAAAAACCGAAAACCGAGACCGAAUUUUUCGGUAAAACCGAAUGCCCACCCCUACCUGUAAGAUGCCACCUCCUUCCACGAUCGUCGUUGCUGAGGCGCCAGCCAAUGCGGCCACCCUGCGCGUGCGCCGGCCAGCCGGCUCUUCGCCCACUGCCCGCCCCUUCCCUGCGUCGUCAACCGCGUCCUACUCCUACUAUGCCGCCGGGCGUGCCGCGGUGGUUGGCCCCACUGCUGGCCUCCGCUCGAGGCCGUGAAGGCCGCGCUUAUCGGUCGUGGCCAUGGCCAGCGGUGAAAUCCAGGAGAAACACACAACUUGGAAUUGCAGAAUUUGAUGCUGUCAUAUGAAACUCUUAUAUGGAUUAUUAAUCAGGAUAUGUAAGAUAUUGAAGAUGGAAAUUGCUACCGCCUACAAGGUGCUCGAAAUCAUGACCUCUGGCAUUUAAAAUGUGUGAAAGACUGUGGUUCUAAACUUUAUUUUUGUUUUCCGUGUAACUACAUUGUUGUGUUUAUUCAUUGUGCCAUAGCUAGAAGCUAGACCGGAACAACUAUGGUAGUAUCAGGCUUUUUUUUUAUCUUAGUGAAUUCAUGAAAAUAUAUUUAUCUAUAGUUCUAUCCAGUUUUCGAUGAUCGUUCUUCAAGGGUUUUUUUUAGCAGAAGUGCCAUGGAAGCUAAUUUAGCUAAACUUGUUGCAUAAGUUAAUAACACCAUUGAAUCUUUCAUUUGCCAACCUUUUAUAGACCUGAAUUUUGGAAACUAAUUAGAAAGUAGACACGAGCUAUAAUGAGCGCGCCACUUGGCGUGCUAAUUUUCUAGUGUAUGUUGGAUGUAGCGUUUGUUCUGAUAUGUAGUUGAUUUCUAUUGCCUUCAUCUGAGGAAAAUUCGUUCAAGCUGAUGCCUGAUAUAUGAUGAGCUGUAGGUGCUUUGAGAUGAUUUUGUAUGCGCCUUGUUAGCUUUCCUCGUGACAAUGCUUUAGGCUGUGUUUAGUUCUAGGGGUGUAAAAUUUUGGCAAGUCACAUCAGAUAUAUG
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
97.76%
ME_num:
MEP:
1.83%
HE_num:
HEP:
0.2%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
shoot
Tau :
0.94
Avg Expression:
0.90
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA | -3.28966057521786 | 0.0404835983521899 |