RiceNCexp
Rice Non-coding RNA Co-Expression Atlas

OSA-LNC107281360

Function Link

Tissue-specific Expression analysis
Differential Expression analysis
Co-Expression Curve
Network analysis

Basic Info

Chr:

Chr6

Start:

12738839

End:

12741048

Strand:

+

Ref_name:

LOC107281360

Sequence
(XR_001546674.2):

UCGUCUUUCUACCGAUUUAUUACCCUAAACAUUCACAUUCUCUCUCCAAUCCCCAUAUUUCCCGUUUUCUCAGAUCAUCUCUCCCCAUCGGGGACGGAGGAGAGCCGAUCCGGAGAUGCCUCACGAGGGGGACGACGACCUGGGUUCUCCAUCGAGCUGGGAUGGCACCGGUGUUGGCGAGGUGAACCAGGCGGCAGCGGCAGAUCAGAGUCACGGCGAUAUUCGGGGCCGCCGACGCGGUUGAGGCUGCCCUGGCGCCGUCCGCUGCCUCUCUAUCGCUGAAUUCCAUCCCCGACGACGGAGUUCCCCUUACUUGAGCGAGAUCGACAGCUGAGUAUUUACGAUCCAUCCCAUCGACGGAUCUACGAGAGCAUUGCCAGAAUCCUCUUCUGCUCCUUGCGUGUCGGUGGUGGGUAGAGAGUGACAGCACCAGCGUUGUUUGAAGCAUGGAUGGUGGCGGCAUACUGGGAGGAGGUAGCGGAUUUGGAGGUCCGGCGGGUCGUUCUCCCUCCCCUGAAGCCAGCCACGCCUCCACCACUAGGCAGUGGAGGAUGUUAGCAAGAUGUCACUGUCAUCGUGCGUGGCAGGUCGGCGCCGCCAAGGAAUGCAGGAGGUCGUUGCAGUGGCAGUAGUCGAUUUUAAUAGAUUUCAGGAGCACAUUGUAACCCAGUGGAUUAGAGGAUGAUGAAGUGUGUCAUGUGGUGACCUGGGAAACAUUGUUGCUGAUGCCGGAGCCAUGCUUGAUCCUGGGCUGCCCAUCCCGACACUGUGGCUGCACAAUCCUGUUCUACGUUGCUUGGUUGGUUGAAUGGUUGGCGAGCCAGCUGCCUCCACUACAACCUUCGUCCGCCUCCCAGCUGCCCCCAUGAUGGAUCCUGCGAUGAAGAGGAGGAUCCACUUAUCUGAAUUUAUUUGAUGAUUUUUGUUGUGUUUAUACCCUUUGUUUUAUUUUUUUUUACUCCUGUGUGUUUAGCAUGUAAUUCGUUUAUUGUAUAGUAUGUGUCUGAAUGAUUUUUUUGAGUGUUUCUGCUCCUUUGUAAUUUUUUUACUCCUAUACGUUUAAGCAUUAUAAUCCGUUUAUUGUAUAGUAUGGGUCUGAAUGUAACAAAGUGUGUAAAAAAUUAUUGUUUGUAUAUGUAUGGGUAAAGAAAUUACUAUCAAUUCUGUCCUACUAAAACAAAGUAAAUAUUUGUUAGUAAAAAAGUUACUUAUA

Sequence
(XR_003242879.1):

UUUAACUUUUAGGGGCUUUAAAAUAAGGCCUAUUGCUGAAGAUGUGCUACUUAAUUGGUAGCGCCCCAUGGUAGCCCACCAGCGAUUCCACGUGGAUUUUAAUCCCCUGCCCACCGUCUUCCCGAAACCCACCCUCAUGGUGCACAGAGUGAUUUUUUUACUCCCUGGCCAUCACUCCCCGAACCAAAUCAUCUCUCCCCAUCGGGGACGGAGGAGAGCCGAUCCGGAGAUGCCUCACGAGGGGGACGACGACCUGGGUUCUCCAUCGAGCUGGGAUGGCACCGGUGUUGGCGAGGUGAACCAGGCGGCAGCGGCAGAUCAGAGUCACGGCGAUAUUCGGGGCCGCCGACGCGGUUGAGGCUGCCCUGGCGCCGUCCGCUGCCUCUCUAUCGCUGAAUUCCAUCCCCGACGACGGAGUUCCCCUUACUUGAGCGAGAUCGACAGCUGAGUAUUUACGAUCCAUCCCAUCGACGGAUCUACGAGAGCAUUGCCAGAAUCCUCUUCUGCUCCUUGCGUGUCGGUGGUGGGUAGAGAGUGACAGCACCAGCGUUGUUUGAAGCAUGGAUGGUGGCGGCAUACUGGGAGGAGGUAGCGGAUUUGGAGGUCCGGCGGGUCGUUCUCCCUCCCCUGAAGCCAGCCACGCCUCCACCACUAGGCAGUGGAGGAUGUUAGCAAGAUGUCACUGUCAUCGUGCGUGGCAGGUCGGCGCCGCCAAGGAAUGCAGGAGGUCGUUGCAGUGGCAGUAGUCGAUUUUAAUAGAUUUCAGGAGCACAUUGUAACCCAGUGGAUUAGAGGAUGAUGAAGUGUGUCAUGUGGUGACCUGGGAAACAUUGUUGCUGAUGCCGGAGCCAUGCUUGAUCCUGGGCUGCCCAUCCCGACACUGUGGCUGCACAAUCCUGUUCUACGUUGCUUGGUUGGUUGAAUGGUUGGCGAGCCAGCUGCCUCCACUACAACCUUCGUCCGCCUCCCAGCUGCCCCCAUGAUGGAUCCUGCGAUGAAGAGGAGGAUCCACUUAUCUGAAUUUAUUUGAUGAUUUUUGUUGUGUUUAUACCCUUUGUUUUAUUUUUUUUUACUCCUGUGUGUUUAGCAUGUAAUUCGUUUAUUGUAUAGUAUGUGUCUGAAUGAUUUUUUUGAGUGUUUCUGCUCCUUUGUAAUUUUUUUACUCCUAUACGUUUAAGCAUUAUAAUCCGUUUAUUGUAUAGUAUGGGUCUGAAUGUAACAAAGUGUGUAAAAAAUUAUUGUUUGUAUAUGUAUGGGUAAAGAAAUUACUAUCAAUUCUGUCCUACUAAAACAAAGUAAAUAUUUGUUAGUAAAAAAGUUACUUAUA

Expression Capacity

HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.

HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.


NE_num:

1

NEP:

0.2%

LE_num:

241

LEP:

48.98%

ME_num:

212

MEP:

43.09%

HE_num:

38

HEP:

7.72%

Type:

HCR (High-Capacity ncRNA)

Tissue Specific Expression

cutoff: tau > 0.9 and Average expression in the tissue > 10


Tissue :

shoot_apical_meristem

Tau :

0.91

Avg Expression:

8.96

Tip: OSA-LNC107281360 is not a tissue-specific expression ncRNA.

Differential Expression

cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01


Num. Condition log2(FoldChange) Padj
1BR-IRGA_409 // spikelet // control condition (29C) for 7 hrs--/--BR-IRGA_409 // spikelet // high temperature treatment (38C) for 7 hrs1.473477449981690.0498566361411804
2Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN1.865301878705150.0026073338157042