Chr:
Chr6
Start:
15831644
End:
15832796
Strand:
+
Ref_name:
LOC107281347
Sequence
(XR_001546654.2):
CUCUCAUGCACUCUCCCCUCCCGGCCUCCCACUCCCUCCCGAGUACCAACCGACAGGCGACAGCGAAGGCGCUCCCUCGAGCCGCACAGCCGGUGCGACUCCGGCGCUCCCGCCGUCCUGCGAGACCCCUACGCGCGCCCAGCCGUGGCGCCCGGCGGCGCCGCUGACAUCGCGCGCCGCGCCGGCGCCCGCGCGGCCUCGUCCUCUUCGCGACUCCGCGUCUCUGGCUCUCCGCCCCUGGCCGCGCCCUCUCCGUCCCACGUCCGGCCGUCGCCCACUCGCCCGGCGGCCUCCCGGGCUCCUGGCGUCUCGCCUGACGCCGCCAGCACCCAACCGCCUAGGCCGGCAUGCCCCAUCCGCCGUCCGCCCGUCCGGCCAAUGCCAGUGCGCCACUCCCUCUUUGGAUCUAAACACAUGCAUCCCUCUAAUUCUAGAUAUGAUGCUCCAAUUGAUGAAGACACCGUUGUUGAUGAAAGGUCAUGUGAAGAACAAGAACCACCUCCACCUCCAUAUGUUGUUGCUCAUUUAGGUCUACCCUGGGUUCACUGGUGGAGAAACCAUCUUUCGUCGGUCGGCCGAAUUCCACAAUAGUCCCG
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
29.88%
ME_num:
MEP:
60.98%
HE_num:
HEP:
8.94%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
embryo
Tau :
0.62
Avg Expression:
4.17
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hN | 1.56913950397416 | 0.000331027095804668 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hN | 1.77732113100297 | 1.51637503831245e-05 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hA | 1.00483957521842 | 0.0290591069630499 |
| 4 | Nipponbare // shoot // No_DIS;Fr13_inoculated--/--Nipponbare // shoot // Drought_during_3_days;Fr13_inoculated | 1.14901113207104 | 0.0474773918651346 |
| 5 | Nipponbare // shoot // Drought_during_3_days;_mock_inoculated--/--Nipponbare // shoot // Drought_during_3_days;Fr13_inoculated | 1.40492682688631 | 0.0323018420431826 |
| 6 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN | 1.27739244251753 | 0.00272318744519407 |
| 7 | Nipponbare // leaf // Watered;Long_Day--/--Nipponbare // leaf // Drought;Long_Day | 1.41490469728201 | 0.0148756862039431 |
| 8 | Nipponbare // panicle // AM--/--Nipponbare // panicle // PM | 2.20137427262957 | 0.000778013320174148 |