Chr:
Chr6
Start:
4424627
End:
4425792
Strand:
-
Ref_name:
LOC107281338
Sequence
(XR_001546638.2):
CUACGCUCAUCCGAAAGACUUUGCUUCCUCACACGACACCUGUCCAAACGAAUCUUAGAGCAGCAAGUCUCUUCUCCCAACAGUUCUCUUUCCUCUCUCUCUUCUCCAAUCUCCCAUCUUCGUACUACCCGGCCGGCCGCCGGCAAGGCAUCAAGCCCACAGUUUGACUGGCAUCUCUGGCCACGGCGAGGUCACAGCUAGCAGCACUGGACGAUGUGUUGAAGAAAGGGGGCGCCAAGGAGGCGCAGCGGCAUCGACCUCGUGCUCAACCCAACCGCCGUCAAUAGGUUUUAAGGUGAAUAUUUUCCAUGGAAGAAGCAUGACGGGUGCGGUGGCAACCGGAAACUCUGCUCCAGACCUUGCCCCCGGACCUUGCUACGUCUGAAGAUGCUGGACCCUCGGUCCUAAGAGCGAGUUGGAUUUGUCGCCAAGUCCCUGGCCGGAGGAAGAAGAAAGGGUACAAAAGAGAUAUUCGCUACUCUUAAGAUUUGUGCGGACAGGUGUCGUGCGGGAAGCAGAGUCUUUCGGAUAAGCGUAGGACUUAAGUCUUACCAAAUUUUCUUCCCUCUUGGGUGGGAUAGUUUUUUUGGGUGGGCUAUUUCCAAAUAGCUCUCAAAUAGCUCACCCUUUUGAAUCUUUUUGAGCUAUUUGGGCUAUUUAAGAGAGGGCUAAAAAAUAUCUCUUAAAUCCAAACAGAGCCAUGUCAGAAAUCUCGAUGCUUAUACCCUUCGGAAGGGAACUACGGCUGGCUUUUGCCAGCCUAAACCUUUAUUCAUUUCAAAAGGUUGGGAACAUUACAUAACUUUUAGUUAGUGUACUGGUGGGAGAGAAGUCUCGAAGGUUGAUAAUGCUCAUACUUGCGCAUGUCGUCUGCAGUAUCACAGGGGAUGUCAAUUGGCGCACAUGCGCUUAAGCUUUUACCAAUGCUGAUUGCUGCAUAUUCGGUCCUCUCCCUCGUCAAGUUUGUAGUACUGUACUAGUGUACUGCUACG
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
38.62%
ME_num:
MEP:
55.08%
HE_num:
HEP:
6.1%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
caryopsis
Tau :
0.93
Avg Expression:
15.57
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Nipponbare // shoot // "Control,22C for 10 min, then 30C for 1h50 min"--/--Nipponbare // shoot // "Heat,42C for 10 min, then 30C for 1h50 min" | 1.50406272615982 | 0.00208434543376021 |
| 2 | WD20342 // leaf // none (control)--/--WD20342 // leaf // 0.5% Na2CO3 solution for 36h | 1.36232468810129 | 0.0235361946239539 |
| 3 | Nipponbare // leaf // "wild_type,control,2"--/--Nipponbare // leaf // "wild_type,drought,2" | 3.04096405813945 | 0.000236650066589215 |
| 4 | Nipponbare // leaf // control--/--Nipponbare // leaf // drought | 3.0408695794193 | 0.000244557524421501 |
| 5 | Nipponbare // leaf // "wild_type,control,1"--/--Nipponbare // leaf // "wild_type,drought,1" | 3.04080406643861 | 0.000238171394460507 |
| 6 | Nipponbare // leaf // Watered;Long_Day--/--Nipponbare // leaf // Drought;Long_Day | 2.54909483950649 | 0.0193178044387124 |
| 7 | Nipponbare // leaf // Non-inoculated--/--Nipponbare // leaf // Inoculated with Pyricularia oryzae | -1.03431694704941 | 0.0248111150869708 |
| 8 | Nipponbare // panicle // AM--/--Nipponbare // panicle // PM | 2.56943853500048 | 3.70029819771026e-05 |
| 9 | 9L136 // leaf // control--/--9L136 // leaf // salt | 3.37911961383815 | 2.05520014677785e-05 |
| 10 | Nipponbare // leaf // Watered;Short_Day--/--Nipponbare // leaf // Drought;Short_Day | 1.85172379240834 | 7.00722888296807e-05 |