Chr:
Chr6
Start:
17470791
End:
17472841
Strand:
-
Ref_name:
LOC107281335
Sequence
(XR_003242865.1):
AUUUUUGUAAGACGUGGAUCUGUAUGUCAACAAUUGUCGUUUGUGUACCUUGGCUGAUCCUGGACAGGGGUUUUAAUGCACAUUCAGCUUAGAAAUUCUGGUUCGUGAAUUUCUGGGCUCAACAAUGGUGCCCCAUCCCAAAAAUUACCUUUGAAUUAUACUAGGUUAUUUAAAAACUAAACUUUCUAUAUAAAAGUUUCUUUUAUAAACAAAUAAAUCUAUUUUUCAAGUUAAUAGCUAAUACUUAAUUAAUCACACGCUAAUGACUCAUCUCGUUUUCAUGCCGGUGAUAAUCUUCAGCCUGCAGCACAUUCAAAUGGAGCCUUACUCUAACAUUAUUCCUUCAUGAUAUAUUAUUAUCAUAAGUACACGGGAGCCCUCGAAACCAAAAUCACAUAGGGAUUAUGGUUGACUAGAAACAUGUUUGAGUGGAUAUAUCAAUCAGGUAAGGCGCAACAUGAUGUCUCGUUCAUUUGUAGUUUGAUUGUUAACAUAUUCUCGACCAAAUCGUAGUUAUCUUUUGUCACCGAAAGAUCAGGAUCCCAAGACACAUCCAAAUCUAGAUUGAUGGAUGGUCUACUUCGCCAAGUAUUAGGAAUGCUUGGUUAAAGGGGUGUUUUGCUUCAUAUCCAUAAUUUGUAGAUUCAUAUUUUUUAACUCCAUAGAGCAUCCUCUCUGCCAUUGUAAACAUGACAAAUGUUUAAGUUAAUCUCCUUACUUCUAAGCAAAACCUAAUUUCCUUUGCUUGUUGCUAACAACCAAGGAAUUAAUAUAUAUCUAUAUGCCAUAUCAUCUGUCUAUCCUUUGUAAAGUCACUUGCCCUUGCAUUACUUACAACUUGCUUCACGAAAAAAUAGCAGUGUGAAAGUGCACAAUAGUUUUAUAGGAUACGCAUGAGUUUCAUAGCAUUCACUUUGCAUGCCCAAACUGGUAAGCAAACAAAUGCCACAUGUCUGUAUCAUCUACCUUUCUCAUACAAAUCAUUAUCUUGUAGCAUGGAAGAAAAUCUGUUUGUUUCAAAGCACACAUGCAUUUUGUCAUAUUUCCUUUUGUGCACUUAUCCAAACAAAUGAAACAAAGGAACCACGUAUACAAACUUUUUCAUACUUAUCUGAACUUAUCGAACAAAGGAUCCACGCAAGCCUGGCUAGAUGGCAUAUGACCUAUUGAUCGCGUGCGUAACAAUCAGUUCACUUUGUGCAUCGUUAUACUUAUCGGUAUCCCUAUAAAUAGGCAGGCUAUGUUGCACAUAAAGAACACAAUUCAAUUAUACAGCAAAUAAUUCACAAUUAUUAGAAUUGUAGCGAAGAUGUCCCAUUGGGGCCAUAGACCAGCAAGGGCCAAGCACCAUAGAGUUCCAUCUCUAAUUCCGGAGGACUUCGCUGUUGUAGACUUCAAGGAGGAGACUAUAGUGUCCCGUGGAGAAAACACAACGGGAAGACAACCACUUAGGGAGGAACCACAGAAGAUGACAGUGAUGGAGGAAUCACACAAUAUUCACAAUCAGGCCAAGCAUCAGUGCUCUAAGGAGCUAAGCGAUGAAGAGGACUCUGAGAAGGGUGAAAGUAGUGGUCAAAAGAAUGGUGAUGAUAAAAAGGAUUCCAAAAAGCAUGGUAGCAAUGGUGAAAAACGAGUAUGAUAAUUGAAGGUAUAUAUGCAGUGAAGAUGUAUGGAUCCUAUGAAACUAGCAAUAAAUGGAAUAAGCAUGCAUGGCUUGCUUAAUAGUAAUUAUAACCAUAUGUGGAAAUGGAUAUUUGAAUUCCAGUAGUUAUUGUAAGUAUUUUUAGUUUCUUCUAUGAAAGUUAUGUAUUAUAAUUUUAUUAAUACCUACUCCCUUCAUUCCAAAAUAAACCAACCUACUAAGCAUGUGACACAUCCUAGUACCAGGUUGGUUUAUUUUGGGACGGAGGGAAUACCAAUCUUGCUAUCUCGUCAUAUCAUCAGUGGCUUUAUUGUCUA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
90.45%
ME_num:
MEP:
6.91%
HE_num:
HEP:
2.44%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
endosprem
Tau :
0.99
Avg Expression:
28.76
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hN | 1.06761345420369 | 0.00721547191798535 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN | -6.58431032154166 | 1.10353351281994e-06 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dA | -6.54762055777732 | 6.21643521175964e-06 |
| 4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN | -6.79525914776754 | 8.99745579346199e-07 |
| 5 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA | -6.96235490704331 | 4.48752534353474e-07 |
| 6 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 1hA | 1.61657122938004 | 6.08657167174785e-05 |
| 7 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 3hN | 1.66576970946408 | 0.000106191465553063 |
| 8 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 3hA | 1.78873085168724 | 4.18941353667013e-07 |
| 9 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA | -7.35983902614663 | 4.01420907604557e-08 |
| 10 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hA | -3.45076214615565 | 2.5492581675711e-05 |
| 11 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA | -5.51850846870996 | 4.83196877398209e-08 |
| 12 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 1hN | 1.77639003798778 | 9.85345937696714e-06 |