Chr:
Chr6
Start:
12873153
End:
12875009
Strand:
+
Ref_name:
LOC107281329
Sequence
(XR_001546626.2):
AAUACUCUCCAGAUUUUUUCCGUGAAUUUUCGGAGCUCAAGAAAUAAUUUUAAAGUCACAAAGUGCAUUUAAUCAAUUUAAAUAAAAAGAAAAAAAAAUUAAAAGACUCUCCUUUCCCUUGGGCCAUUUUUUGGCCCAAGUCCUCCCUUCCUCGGGCCGGCCCAGCUCGCUCCUCCUCUCUCUCAAAGUCCGGCGCACCUCCCUCUCCUGGCCUCCCCUCUCCCUCCCUCGCCGACAGGUGGGCCCGUCGACCCCACUUGUCAGCUCCAUCCCCAACCUCCAGCUCCAUCCCCAACCGCCGCCCAUGGCCGUCCACUACACCGCCAAAUCCGCCACCUCCUGUCUCCCGAGUUUGCAUUCAACCGCGUGGACUCGGUCCCCUCCACGUCCUCCACCAUUUUCCCCACUCUCCCCAUGAAAAUCGGCGCCGGUUAACCCCUCCACCACCCCCACGUUGGCGCCCUACGUCGCCGGCCGUUUGCCGCCCUCAUCGGCCACGAUUCUCCCUCCCCGAGCAUAUAUAAACCAUUCCCACACCUCCCUCUCCAUUUUCCCCUCUCUCCGGAGCCCUCCCGUGCCCAAAAACCACAGCGCCACCGCCGCUCCUCGCCUCCGCCGCUCGCUGGCGAUUUCCAGCCGCCCCUCACCGCUGCUCCAGCCGUCGCCGCGCCGAGCCGCCGCCACCGCCAGCUUCGCCACCGCAAGGGCAAGCCCGGCCGCCUCUUAUUUCCCCCUCUCCACCCCCUGAGCACCACUCCCGCCGCCAACCCGAGCCACCGCCGCUUCUACCGCCUCCAGUUGCCCGCCACCGCCGCACGCCACCGUUGGUCCCACUGGCUUCGCCAUGCCUUGCCGCUUCCCGUCCACCCCUCCUCCUCCAAUCAUCACCGAAACUCCACCUCCGCCGUGCACUCGAGGCCGAUGCUGUGUUUGGUGCCUCCAGCCGCUUGCCUCCGGUGCUCGGAGCCACGUCCGGCAGCGCCGACAACCCCUCCGUCUUCGCGGUGUCGAGCCGCACGACGGCCACCCCUCCCUCUUCGUUAAUCGCCGUCGGAACUCCGUCCCCUUCGCUUGAGGUCGCGGCCGCCCUCGUCCGCCGCGUCCCGCCCAUGGAGCCGCCACGGGAGCGCCGUCCCGCCGUCGUCCCGAGGAGCUCGCCGCCGCGCCCGUCGCCCCUCACCGCCUGGCGCACGCGUGUAGAAUCCGCUGUUUCGGAAGUUCGCAGUCGCGAGGAAAAGAGUUCAGAAGGUUGAAGU
Sequence
(XR_001546627.2):
AAAUACUCUCCAGAUUUUUUCCGUGAAUUUUCGGAGCUCAAGAAAUAAUUUUAAAGUCACAAAGUGCAUUUAAUCAAUUUAAAUAAAAAGAAAAAAAAAUUAAAAGACUCUCCUUUCCCUUGGGCCAUUUUUUGGCCCAAGUCCUCCCUUCCUCGGGCCGGCCCAGCUCGCUCCUCCUCUCUCUCAAAGUCCGGCGCACCUCCCUCUCCUGGCCUCCCCUCUCCCUCCCUCGCCGACAGGUGGGCCCGUCGACCCCACUUGUCAGCUCCAUCCCCAACCUCCAGCUCCAUCCCCAACCGCCGCCCAUGGCCGUCCACUACACCGCCAAAUCCGCCACCUCCUGUCUCCCGAGUUUGCAUUCAACCGCGUGGACUCGGUCCCCUCCACGUCCUCCACCAUUUUCCCCACUCUCCCCAUGAAAAUCGGCGCCGGUUAACCCCUCCACCACCCCCACGUUGGCGCCCUACGUCGCCGGCCGUUUGCCGCCCUCAUCGGCCACGAUUCUCCCUCCCCGAGCAUAUAUAAACCAUUCCCACACCUCCCUCUCCAUUUUCCCCUCUCUCCGGAGCCCUCCCGUGCCCAAAAACCACAGCGCCACCGCCGCUCCUCGCCUCCGCCGCUCGCUGGCGAUUUCCAGCCGCCCCUCACCGCUGCUCCAGCCGUCGCCGCGCCGAGCCGCCGCCACCGCCAGCUUCGCCACCGCAAGGGCAAGCCCGGCCGCCUCUUAUUUCCCCCUCUCCACCCCCUGAGCACCACUCCCGCCGCCAACCCGAGCCACCGCCGCUUCUACCGCCUCCAGUUGCCCGCCACCGCCGCACGCCACCGUUGGUCCCACUGGCUUCGCCAUGCCUUGCCGCUUCCCGUCCACCCCUCCUCCUCCAAUCAUCACCGAAACUCCACCUCCGCCGUGCACUCGAGGCCGAUGCUGUGUUUGGUGCCUCCAGCCGCUUGCCUCCGGUGCUCGGAGCCACGUCCGGCAGCGCCGACAACCCCUCCGUCUUCGCGGUGUCGAGCCGCACGACGGCCACCCCUCCCUCUUCGUUAAUCGCCGUCGGAACUCCGUCCCCUUCGCUUGAGGUCGCGGCCGCCCUCGUCCGCCGCGUCCCGCCCAUGGAGCCGCCACGGGAGCGCCGUCCCGCCGUCGUCCCGAGGAGCUCGCCGCCGCGCCCGUCGCCCCUCACCGCCUGGCGCACGGGUUUUUCCUCGUUUUGCGUGCCAGCGUGUAGAAUCCGCUGUUUCGGAAGUUCGCAGUCGC
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
39.63%
ME_num:
MEP:
58.94%
HE_num:
HEP:
1.22%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
root_differentiation_zone
Tau :
0.74
Avg Expression:
2.84
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hA | -4.30754610570925 | 0.0420302705355281 |
| 2 | Nipponbare // shoot // Drought_during_3_days;_mock_inoculated--/--Nipponbare // shoot // Drought_during_3_days;Fr13_inoculated | -1.45727488895876 | 0.000376672271547027 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN | -4.48748976676276 | 0.0312217432678161 |
| 4 | Nipponbare // shoot // No_DIS;_mock_inoculated--/--Nipponbare // shoot // No_DIS;Fr13_inoculated | -1.06378416668934 | 0.0358361956489192 |
| 5 | Nipponbare // panicle // AM--/--Nipponbare // panicle // PM | -1.69350491564397 | 0.0178729961970477 |