Chr:
Chr6
Start:
14196526
End:
14198716
Strand:
+
Ref_name:
LOC107281226
Sequence
(XR_001546585.2):
CGCCGAACCCUCUCCCGAUAUCGCGCGUUGGAUCGCUGUUUCCUCCCCCAAAAUCGCGCGCCCUCCUCUCAAAAAAAAUCGCGCGCCCCCAUCUUUUUCCUCUCGCAAACGUCACCGCGCUUAUGCCGCCAUUCAUCGCCGAUUCCUUCGCCUCCACAUGAAGGGGUAGCCGAUUCCUCUGCCCCAAAUCCAGGUCGCCGAACCCCUGUCCCCAGCUCGUCGUCACUGAUUCCCCCUCUCACAUCACCGGGACCACCACCGCGUUUGGUCGGCGCCGAUCCCCAUCUCGAGCCGCCACUAAUCGCCGCCCAUCUCGAAGACCACAUCACCGCCUGAUCCUGCUUCCUCGCCGUCGACCUCCGCUCGUCGUUCACGGCCACACCACUGCCCACGAUCAUCUCCGAGUCACCACGCGGCGCGCAACCGUCACGUUCCAUCGCUGCCGCCCCCGUCAUCAAUUAUGCCUCCGCCAACGCCUCCAUCCGCGGCUCCACGCUCAAGUCGAUGCCGUCAACCCCACCGAUGAGGUAUUGACGUCAUCUACUCAACCGCUGCUUCACAUAUGUAAGUUGCAAACAGGUCUCUGAAAAUCCUCAUGAUCUGUUAAUUGCAUGUACAUAUGCAUUAGGCAAUAGGUUUGGUUAUGGAUAUAUAAAGCUUCAGUGAACAGUCAAGGUGGAGAUUUUGCGUCUUCAGUGAACAUGAUUUUGGAUGCUCUAUAAUUUUCUUGUAUUUUUUUUGUCAACUGAACUGUACAGAUCUAUAUAAUUCCAGCAAAUUUUCUCAAACAUGAUUCACAUGCUUCUUAUUCCUGCAAAUUUUGUUCUUCUACUUCUUUUCCUCUUGCAUAUGUCAACAUAAUGGAGUGACUAACUUUUGGGUAUUCUUGCCUUUUGAUUUGCAGACACUUCACAUAAAUCAACUGUGCAUAGACAUAUCCCAGAAGAAUGGAGUGACUAAAUAAAAUUUUGGUUGCUCCAAGCAUCUCUGAAAGAACUUGUUACCCUGUAUAGAAUUAAGUGAACAAUUUAAUUAAGUCCGAUUUGUCAUUCGAGGGUGCUUUUGAAGUAAUACGUGGUAUAUAUUAAAUUGCAUGACUUGCCUUUGAUGAAGCUAUAUCCUUAUGGUCAAAUGUCAUCUGUAACAUUUCAAAUUCAGGAUGGUAUGCAUGGGGGCGAUGAGCCUCAGAUUUCAAGUUUCCUUUUUUUUUAUCCCGUGUUUGACCUUUGAAUUGCAUCUCAGGCUUAGUAUCAUGGUUAAUCUGCCAACUUAUUCAAUAUCAUGGAAUAAAAUACAAAGAAAGAAUUUCACUCCAUAUGCUUUUGAAUCUAUCGCAGGGGUCAGAUUGUUGAGGUUCAUCUCAACAAUUCAACAAGGAUGACAUAACAGCUGUUGAAAUUUCUUGUUUCCUGCGUCCUGUCUCUGAUAUUCAGUUGCUUAUUCUGUCAUUUUUUUUUGCAGGAAUUGUCAUGUCACCUUGGUUGCUUUGCAGCUGCAAAUGGUAGAUGUCCAAAAGCAUCUGAGGGGUGGCUCAUAAUCCGGCUGCAAUAGAUUUUGAUGUUGUAUGUUUUCAUUUAACAUUGUAAAAUGAUGAAUGCCUUCUUUGUGAUGUUGAUCAGGGAUAAGAUGCCCAUGCUAUAUAUGUUUCUUUGUCAUUUGAGAUCAA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
47.97%
ME_num:
MEP:
51.42%
HE_num:
HEP:
0.41%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
shoot
Tau :
0.75
Avg Expression:
1.83
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Nipponbare // shoot // Drought_during_3_days;_mock_inoculated--/--Nipponbare // shoot // Drought_during_3_days;Fr13_inoculated | -1.5098541631947 | 0.00116084799951728 |
| 2 | Nipponbare // root // "mock,1_day"--/--Nipponbare // root // "auxin(50CM_2,4_D),1_day" | 1.31893097427399 | 0.0483549366215477 |
| 3 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_BLS256 | -1.30839633049187 | 0.0021793716133453 |
| 4 | Nipponbare // shoot // "Control,22C for 10 min, then 30C for 10 min"--/--Nipponbare // shoot // "Heat,42C for 10 min, then 30C for 10 min" | -1.54940020671396 | 0.0239305861826043 |
| 5 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_L8 | -1.35920550079476 | 0.000331182168405697 |
| 6 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_B8_12 | -1.15694790007915 | 0.00207331474439596 |
| 7 | Nipponbare // leaf // "wild_type,control,2"--/--Nipponbare // leaf // "wild_type,drought,2" | -1.8070193700355 | 0.0143473751021457 |
| 8 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_CFBP7342 | -1.08264719728506 | 0.00132949110017156 |
| 9 | Nipponbare // leaf // control--/--Nipponbare // leaf // drought | -1.80713351090476 | 0.0146005615359413 |
| 10 | Nipponbare // leaf // "wild_type,control,1"--/--Nipponbare // leaf // "wild_type,drought,1" | -1.80719404957278 | 0.0143891164562835 |
| 11 | Nipponbare // leaf // Watered;Long_Day--/--Nipponbare // leaf // Drought;Long_Day | -2.01684118085857 | 0.0114343498815121 |
| 12 | Nipponbare // leaf // Non-inoculated--/--Nipponbare // leaf // Inoculated with Pyricularia oryzae | -3.50264658012548 | 1.93412678811159e-14 |
| 13 | Nipponbare // panicle // AM--/--Nipponbare // panicle // PM | -2.20197650076938 | 4.13030886586944e-05 |