OSA-LNC107281220


Function Link


Basic Info

Chr:

Chr6

Start:

30141439

End:

30151800

Strand:

+

Ref_name:

LOC107281220

Sequence
(XR_001546574.2):

ACUGGAGGGACCUCAUUGCAAUUUGCCAGCCUCGUCGUCUCCAAAGUCCAAAAGCCCAUGGGCUCCGCUCCCUCAUCGGCGAGGCGCCGCCGCCGCCGCCGCAGCGGCGCUCCUCGACGGCACGCGCCCUCCACCUCCGCCUCACCGGAUGGUUCGAGCGGUUCUUCAUAGAGGAUCCGACGGCGCCCUGCUCGUCGCGGCAGCAGCUGAGUGCCCUUACAGCCAUUGUGACAGUUUGUUGGCUUUGAUCCGGUACUGAUGUCUGUGGAGAGAGUGAGCGAGGGAUUUGAUCCAUUUUUGAAGAGUUUGCUUGCCGGAAAUUAUACCUUGCUGAUGUUUCAAUCAGGCGCACACAAGGAUCGUUUCAGAUGAAAACGGCUGCCGAUAUAUGCACUGCAAAUAAUUCAGGGACUGUGACCAACUGUAUGCUUCAAAGUUCAAACUAUGGAAAGUGAAGACAUGGUCCGCUCAUUCUGGGGGCCGCAGCUACAGAUGUUUUCGCCGUGCGCACGUGUGCAUGAACUUGUUCCCUUGGAGUUACAUCACGCAUUCAUGCUGGCGCAGCUGUUGAUUGACUCUGUGUUUUGUGGAGUCGAAACAUUGAUAGCCUGAUUGAUGUGGUCUCGCGGAACAUUGCACAUGCAUCAAUGAAUCGCGGUUUGUGACACGCUGUUCAUCAAGCAAUGUGUGUGGGAACGCGGGUGCUUCAAAUUCUCUGAACCACAAAAUCUUCACUGUGAGGAUCGGAGUACAUUGCAUUCUGAAAUGAUUUGAUGCCAGCACUGGAGGAGACUCCACUCCGGCUGUAUCCUCUUGAUCUAUCUAGAGAAGACUAGCUGAACUAGGGGAUGAUGCACUGCAACCUACUGCCAAAUAUUUUAUACGCUUGGAGCAUAUCUUUCAGUGAUCACAAGAAGCUACGGAGUCUACCCUGUUCAUCUGCUGGCCCAUUGGAGGCAGGGGUUGCUACAAAUGGAAUCAACGGGGCCGAUAAAGAACUAGACAAGAUGAUGGAUUUGUGCAUGCUCCCCUAAAAUAUAAGGGUCAAUAAAGGAUUAAGCUAAUAUUUUUUUCCAUUCGGCAUAAGAGGAAUUCAACGAAAAAAACAUUAGUCAAUAUUGGAGGGGAGAAUAAUUAAAUCUGAGAAAAGAAAAGGUUUUAGACACCACUAUAUAUAUAUACCCCACUUUAAG

Sequence
(XR_001546575.2):

ACUGGAGGGACCUCAUUGCAAUUUGCCAGCCUCGUCGUCUCCAAAGUCCAAAAGCCCAUGGGCUCCGCUCCCUCAUCGGCGAGGCGCCGCCGCCGCCGCCGCAGCGGCGCUCCUCGACGGCACGCGCCCUCCACCUCCGCCUCACCGGAUGGUUCGAGCGGUUCUUCAUAGAGGAUCCGACGGCGCCCUGCUCGUCGCGGCAGCAGCUGAGUGCCCUUACAGCCAUUGUGACAGUUUGUUGGCUUUGAUCCGGUACUGAUGUCUGUGGAGAGAGUGAGCGAGGGAUUUGAUCCAUUUUUGAAGAGUUUGCUUGCCGGAAAUUAUACCUUGCUGAUGUUUCAAUCAGGCGCACACAAGGAUCGUUUCAGAUGAAAACGGCUGCCGAUAUAUGCACUGCAAAUAAUUCAGGGACUGUGACCAACUGUAUGCUUCAAAGUUCAAACUAUGGAAAGUGAAGACAUGGUCCGCUCAUUCUGGGGGCCGCAGCUACAGAUGUUUUCGCCGUGCGCACGUGUGCAUGAACUUGUUCCCUUGGAGUUACAUCACGCAUUCAUGCUGGCGCAGCUGUUGAUUGACUCUGUGUUUUGUGGAGUCGAAACAUUGAUAGCCUGAUUGAUGUGGUCUCGCGGAACAUUGCACAUGCAUCAAUGAAUCGCGGUUUGUGACACGCUGUUCAUCAAGCAAUGUGUGUGGGAACGCGGGUGCUUCAAAUUCUCUGAACCACAAAAUCUUCACUGUGAGGAUCGGAGUACAUUGCAUUCUGAAAUGAUUUGAUGCCAGCACUGGAGGAGACUCCACUCCGGCUGUAUCCUCUUGAUCUAUCUAGAGAAGACUAGCUGAACUAGGGGAUGAUGCACUGCAACCUACUGCCAAAUAUUUUAUACGCUUGGAGCAUAUCUUUCAGUGAUCACAAGAAGCUACGGAGUCUACCCUGUUCAUCUGCUGGCCCAUUGGAGGCAGGGGUUGCUACAAAUGGAAUCAACGGGGCCGAUAAAGAACUAGACAAAUAAAAAAUUAACCAUGCAUGUUCCAUACAUCCCUCCACAGGAGUAGUACGUGCAGUACACUAGCUGGAGACUGGAAAUGAUCGACUUGAGUUGAGUCGGUCAUCACAGUCCACCGUGUGCAUAUAUAGACGAUGCAUCAUGAGGUAUGCACACUGUCUAAGUGUCUAUACACCAACAGUACUUGAUACAUAGGGACCCACUAGGUAGAGACCAGAGAACCUAAGCUAAUCAUGCUACACCUCUCUCGAUAGCAAGCUGCUAGCUAGCUUAACCAGCAAAAGUGGCUAUAUGCAGUGGCCUUGUCUGCAUGGAUCGAUGCUCUUGCUCUUGCCUCUUGGUUUUGAUCAUGUAGGAUCAAUAUAUGCAGGCAGGCAGCUGCAGGAACAGGUAUAGUAGUGUACUACAAGUGUGGAAGCCCAUGCAUGUUUGAUGUUUUGCUAUAGCUUUGUAGUCAACUAUAGUCAUAUAUAUGGCUUCUUCUCUUCACUGGUGGAGAAACCAUCUUUCGUCGGUCGGCCGAUUUCCACAAUAGUCCCGGAUGCAAUAAAAACCGGGGCUAAAGAUGAUCUUUA

Sequence
(XR_001546576.2):

ACUGGAGGGACCUCAUUGCAAUUUGCCAGCCUCGUCGUCUCCAAAGUCCAAAAGCCCAUGGGCUCCGCUCCCUCAUCGGCGAGGCGCCGCCGCCGCCGCCGCAGCGGCGCUCCUCGACGGCACGCGCCCUCCACCUCCGCCUCACCGGAUGGUUCGAGCGGUUCUUCAUAGAGGAUCCGACGGCGCCCUGCUCGUCGCGGCAGCAGCUGAGUGCCCUUACAGCCAUUGUGACAGUUUGUUGGCUUUGAUCCGGUACUGAUGUCUGUGGAGAGAGUGAGCGAGGGAUUUGAUCCAUUUUUGAAGAGUUUGCUUGCCGGAAAUUAUACCUUGCUGAUGUUUCAAUCAGGCGCACACAAGGAUCGUUUCAGAUGAAAACGGCUGCCGAUAUAUGCACUGCAAAUAAUUCAGGGACUGUGACCAACUGUAUGCUUCAAAGUUCAAACUAUGGAAAGUGAAGACAUGGUCCGCUCAUUCUGGGGGCCGCAGCUACAGAUGUUUUCGCCGUGCGCACGUGUGCAUGAACUUGUUCCCUUGGAGUUACAUCACGCAUUCAUGCUGGCGCAGCUGUUGAUUGACUCUGUGUUUUGUGGAGUCGAAACAUUGAUAGCCUGAUUGAUGUGGUCUCGCGGAACAUUGCACAUGCAUCAAUGAAUCGCGGUUUGUGACACGCUGUUCAUCAAGCAAUGUGUGUGGGAACGCGGGUGCUUCAAAUUCUCUGAACCACAAAAUCUUCACUGUGAGGAUCGGAGUACAUUGCAUUCUGAAAUGAUUUGAUGCCAGCACUGGAGGAGACUCCACUCCGGCUGUAUCCUCUUGAUCUAUCUAGAGAAGACUAGCUGAACUAGGGGAUGAUGCACUGCAACCUACUGCCAAAUAUUUUAUACGCUUGGAGCAUAUCUUUCAGUGAUCACAAGAAGCUACGGAGUCUACCCUGUUCAUCUGCUGGCCCAUUGGAGGCAGGGGUUGCUACAAAUGGAAUCAACGGGGCCGAUAAAGAACUAGACAAAUGGAUCGGCAAUGGAUGUACGCUGACCGGCGGUCCAAAGAGUUUAUUGACGGCGUGC

Sequence
(XR_003242987.1):

ACUGGAGGGACCUCAUUGCAAUUUGCCAGCCUCGUCGUCUCCAAAGUCCAAAAGCCCAUGGGCUCCGCUCCCUCAUCGGCGAGGCGCCGCCGCCGCCGCCGCAGCGGCGCUCCUCGACGGCACGCGCCCUCCACCUCCGCCUCACCGGAUGGUUCGAGCGGUUCUUCAUAGAGGAUCCGACGGCGCCCUGCUCGUCGCGGCAGCAGCUGAGUGCCCUUACAGCCAUUGUGACAGUUUGUUGGCUUUGAUCCGGUACUGAUGUCUGUGGAGAGAGUGAGCGAGGGAUUUGAUCCAUUUUUGAAGAGUUUGCUUGCCGGAAAUUAUACCUUGCUGAUGUUUCAAUCAGGCGCACACAAGGAUCGUUUCAGAUGAAAACGGCUGCCGAUAUAUGCACUGCAAAUAAUUCAGGGACUGUGACCAACUGUAUGCUUCAAAGUUCAAACUAUGGAAAGUGAAGACAUGGUCCGCUCAUUCUGGGGGCCGCAGCUACAGAUGUUUUCGCCGUGCGCACGUGUGCAUGAACUUGUUCCCUUGGAGUUACAUCACGCAUUCAUGCUGGCGCAGCUGUUGAUUGACUCUGUGUUUUGUGGAGUCGAAACAUUGAUAGCCUGAUUGAUGUGGUCUCGCGGAACAUUGCACAUGCAUCAAUGAAUCGCGGUUUGUGACACGCUGUUCAUCAAGCAAUGUGUGUGGGAACGCGGGUGCUUCAAAUUCUCUGAACCACAAAAUCUUCACUGUGAGGAUCGGAGUACAUUGCAUUCUGAAAUGAUUUGAUGCCAGCACUGGAGGAGACUCCACUCCGGCUGUAUCCUCUUGAUCUAUCUAGAGAAGACUAGCUGAACUAGGGGAUGAUGCACUGCAACCUACUGCCAAAUAUUUUAUACGCUUGGAGCAUAUCUUUCAGUGAUCACAAGAAGCUACGGAGUCUACCCUGUUCAUCUGCUGGCCCAUUGGAGGCAGGGGUUGCUACAAAUGGAAUCAACGGGGCCGAUAAAGAACUAGACAAGUGAGUUUUUCCUCAUCCAUUAUCUUUUGCCGAUUGGUAUGUGCAUAUUUAAAUCACUUCAUUAUAUACAUACGACUAUAUAUGAUGCUGCACCAGGUACAAAAAUUCACUAUCCUUUUCCCCUUAAUAUAUAAUACCAUCUAAUUAUUUUGUUAUGCAUGUUUCUUCUACUUCUUGAUGAAAUGAAUAAUUCUUUUUUGUUAUGUAUGAAUUUUGUUGCAUUUAUUUAUUUGUUGGGCAUAUGGGCUAUAGUGAAACGUAUACUAGCUAGUAGAGAUGUACUCCUUCCGUCCCAAAAAAAGGCAAACCUUAGGUUUCCGUGUCCAACUUUAACUGUCCGUCUUAUGUGAAUUUUUUUUAUAAUUCGUAUUUUCAUUGUUAUUAGAUGAUAAAACA

Sequence
(XR_003242988.1):

AGAUGCUGCUUCCCCACGCAAAAAAUGCAAAUACAGGUAACUGGAGGGACCUCAUUGCAAUUUGCCAGCCUCGUCGUCUCCAAAGUCCAAAAGCCCAUGGGCUCCGCUCCCUCAUCGGCGAGGCGCCGCCGCCGCCGCCGCAGCGGCGCUCCUCGACGGCACGCGCCCUCCACCUCCGCCUCACCGGAUGGUUCGAGCGGUUCUUCAUAGAGGAUCCGACGGCGCCCUGCUCGUCGCGGCAGCAGCUGAGUGCCCUUACAGCCAUUGUGACAGUUUGUUGGCUUUGAUCCGGUACUGAUGUCUGUGGAGAGAGUGAGCGAGGGAUUUGAUCCAUUUUUGAAGAGUUUGCUUGCCGGAAAUUAUACCUUGCUGAUGUUUCAAUCAGGCGCACACAAGGAUCGUUUCAGGUCUGUUGCAAUUCUGAACUGCUUAUGCUUUUGCUUGAUCUCUGAACUUCUCAAUUAGGCAUGGUACUAUUUACUAAAUCUAAUUCAUUUUACUAGCUUUCUCAAGACGAUGUAGUUGUCACUUUUCAGUAGUAACACAUGGAGACACACGAUGGAUUGAUGGAUUUAGUAUUGCCACCACGAGUUGCAUUUAUCCAUAUGAUUUGAUUGCUGAACGAUUUGCGUGUUACCACCAUGAGGGCACAUGUCCGUAUGAUUUGAUUACUAAACCACAUGGAGAUUUUGACAUUGUAACCGUCGGAGACAUGCAUCAACAGAUUAUGUAUUGUGAUAUUCCGUGUCUGGUUUCAAGCAGGGCCACGGCCUACAAACCAAUAGAAACCAGCUCUUAAUCAUAAGUACUAUCACUUGUAAAGUAAAACGUGCUUUAAGAAUCAUGAUAUCUCUAACAGGGCAAGCAAAUAAUUAGGUGUUCAGGAUUUCUACCAGACAAAUGAGUUAUGGAGUAUGAUGACCUCUCUAGUUGAUCAAAACUUAUUAACAUACUAGUUAGUCCGUUAAUCAUUGAUUUUCUUAAUCGUUGGUCUUAGAAAUUGAUUAAUUUUUACUUGUCUACUUGUCACAUAAGUGUACUGCAUAAACUAUUCUCUUUAUGUUGCUUAUUUUCCUGGUUCGAUCAUCAUAAAGUUGUCUCAUGGUUUGGUUCUGUUCAGCAAUCAAGAGUUUUACUGAACAAGGUCCAAUCAAGAGUUUGCUUCUUCUGCAUAUGUGUAGAAUGAAGGAUCCCUUUAAACAAUUAGUUUUUGAUUGGUUACAAUCUUUGUAAUUUUUUCCUUUACGGUUUUCAUGUCCUUUUGUAUGAUGUAAAUAUUAUUCUUUUAUAAAAGCUAUACUGUUGGGCAAAUGCCUGACAGUAAUUCCCAUAAAAAAAGGUCCAAUAAAUUUUUUUCAAGAUAGACAGAAACAUAAAAGAUGUACAUGUAUCUAAAUAGUCAAGAUGCAAGUCUUGAGAUGACUUUACAGCUGGCCACAAUGGAAUAGUUGGAUACGUAACGUGAAGUGAAGUUCACUAGGGAUAAGCUGGGUUUCCUUAUGAUUUAUGAAUCCCAAAAUGUGAUUUCUCUUGCUUCAAACAGCAUACUGGUUCAGCAUAUUAGGAAUGGGUAACCAAACCAGAAAUUUCCAAAAGAAUGAAAUCCCCGUCACUUGGUUUUAUCAUCAUUGAUCAUCCCUCCUUCAGGAAUUUGUCUAGUUCUCUAGCUUUUUAUUUGGAAGUAUGUGCGUCUAGUUCCUUCGCCAGAAAGCGCUACAAAUACACUUUGUACUAGGAGCUAAUGAUGCCAAUUUGUUCGAUGCACCAUUUAGACAGGAUGCAAACAUAUUACAUGUAGGUUCCUAUAUUUUUUUUAUCGGAAAUAUAGACUCCUAUAUUUGUUCCAUGAAGCAAAACGAAUGCAACCUGAUCAUGUAUUUUUUCCAGUUGAACGUGAGCAUGAUAUCAUGGUGUCAUAGCAUGUCUUCUUCCUUCAUUGAAAACUGUUUGGCUACUGUGCAUAUGUUGAGAUUUGGUACUUCUAUUGACCUUCUAAAAUAAAAGAAAUCUAUGUUAAGGACACUGUCAAGAUCAGUCUUUACACUAAAACCAGAUAUCUUGUGUUGAUAGUUAUUGUUCUUCAUGAAACUAGUAUCAUUAUAAUAUUGUCACAUCUUGUGUUUUCACUAGAAUUCUACUAGAAAUGUUCUAUAUUUUUAUUGUGCAUAUUGCACUAUAGAUGCCAAAACAACCUAGACAAUCCUGACAACAUAUCUGUGCUCUGUGUACCACAAACUUCAGAGUCUUGUACUGCUCUGGCACUUUCAUCGUUGCACAAAUAUUCCGAACUAGCUAAUUCCCUCAACUUCCUUUUAUUUGGUCACUUUCUUUUGAUUUUUUCCUGCUCACAGUACUCUUUCCAAUAUCAAUUCCAAGUUUUUAUUCUGGAUAUGUUCUGUGGCUAUGCUACACAUUUUGAACUUGGGAUGUUAAAGAUGUCGUCCUUUCAACCAACCUAGUCAGAACCAGCUCACAGCAUAUUUUUGGUCAGGGUGCGCAGGUGAUUGGUGUGCCCCCCUUCUUGGGUUCGUGUUGUUAUGAAAUAAGGCAGAGCUUCCGUCUUUGUUUUAAACUUUAAAAAAAGACGUUUCUUCCAAGAAAAAAAAAGAUGUAGUGACUGCUUGCCGACAGGGAAGAGAGAGAUGAAAACGGCUGCCGAUAUAUGCACUGCAAAUAAUUCAGGGACUGUGACCAACUGUAUGCUUCAAAGUUCAAACUAUGGAAAGUGAAGACAUGGUCCGCUCAUUCUGGGGGCCGCAGCUACAGAUGUUUUCGCCGUGCGCACGUGUGCAUGAACUUGUUCCCUUGGAGUUACAUCACGCAUUCAUGCUGGCGCAGCUGUUGAUUGACUCUGUGUUUUGUGGAGUCGAAACAUUGAUAGCCUGAUUGAUGUGGUCUCGCGGAACAUUGCACAUGCAUCAAUGAAUCGCGGUUUGUGACACGCUGUUCAUCAAGCAAUGUGUGUGGGAACGCGGGUGCUUCAAAUUCUCUGAACCACAAAAUCUUCACUGUGAGGAUCGGAGUACAUUGCAUUCUGAAAUGAUUUGAUGCCAGCACUGGAGGAGACUCCACUCCGGCUGUAUCCUCUUGAUCUAUCUAGAGAAGACUAGCUGAACUAGGGGAUGAUGCACUGCAACCUACUGCCAAAUAUUUUAUACGCUUGGAGCAUAUCUUUCAGUGAUCACAAGAAGCUACGGAGUCUACCCUGUUCAUCUGCUGGCCCAUUGGAGGCAGGGGUUGCUACAAAUGGAAUCAACGGGGCCGAUAAAGAACUAGACAAGUGAGUUUUUCCUCAUCCAUUAUCUUUUGCCGAUUGGUAUGUGCAUAUUUAAAUCACUUCAUUAUAUACAUACGACUAUAUAUGAUGCUGCACCAGGUACAAAAAUUCACUAUCCUUUUCCCCUUAAUAUAUAAUACCAUCUAAUUAUUUUGUUAUGCAUGUUUCUUCUACUUCUUGAUGAAAUGAAUAAUUCUUUUUUGUUAUGUAUGAAUUUUGUUGCAUUUAUUUAUUUGUUGGGCAUAUGGGCUAUAGUGAAACGUAUACUAGCUAGUAGAGAUGUACUCCUUCCGUCCCAAAAAAAGGCAAACCUUAGGUUUCCGUGUCCAACUUUAACUGUCCGUCUUAUGUGAAUUUUUUUUAUAAUUCGUAUUUUCAUUGUUAUUAGAUGAUAAAACA


Expression Capacity

HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.

HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.


NE_num:

1

NEP:

0.2%

LE_num:

332

LEP:

67.48%

ME_num:

159

MEP:

32.32%

HE_num:

0

HEP:

0.0%


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Type:

MCR ()


Tissue Specific Expression

cutoff: tau > 0.9 and Average expression in the tissue > 10


Tissue :

embryo

Tau :

0.82

Avg Expression:

2.44

Tip: OSA-LNC107281220 is not a tissue-specific expression ncRNA.

Differential Expression

cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01


Num. Condition log2(FoldChange) Padj
1Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hN1.141005090116520.00022900803214939
2Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hN1.065396056712640.000141067432899716
3Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1.008774007409140.000264954351990408
4Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hA1.154024408243151.099937680931e-05
5Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN1.005564304682490.000162883478019213
6Nipponbare // panicle // AM--/--Nipponbare // panicle // PM2.239447103738060.0083584436360259