Chr:
Chr6
Start:
13738312
End:
13740006
Strand:
+
Ref_name:
LOC107281217
Sequence
(XR_001546570.2):
AGGGGGGGUCCGGGGACGCGAGCGUAGCGGCGGCGCGCCGACACUGCAGCAGUCAGGGCACGCGGCACUCCGGCCGCUGGCUACUGGCGGGCGGCAGCAAGGCAGGGUGCAGGUGGGCUGGCGGCCAGCUGGGGGAUGCGGCGGCGUGACGCGGCAUCAAGCAGGGAAGGGGGCAUCUGGGCAAGGUGCAAAGGGCGUCAGCAGCAAGCAGCAGCACUGCAGCAGGUCAUCAGCCCAUUGCCCAGCACAGCAGAUUGAGGAAUUGUGGUUGUGAAGAUGCCGAAAAGAACACUGCUCACAUAUUAUUCUAGUUUAAGUAACACAAAUACCAGCGAUCCUCCACUCAAUAAUGAGAUUGCAAGUCAGUCAAAGAGGCCUAGGGCAGAGUUUAGUCAUAUGGAUAUCAUUGGUGAUCCAGUGGAAUGGAAACCAAUUGAGAAUUAUCAACCUGAAAUUAGAGAUCAAGUAAAAAGGAUAUAUGCAUUGAGUGGUCCAACUCAACCAGAUUUUUGCACAUUUCCUCGUAAGUGGCAAAGUGGUGAAUGGAGGUCCUUUCAAAAAGCUUGGUUCAAUGAGUUCGAUUGGCUUGAGUAUAGUGUUUCAAAGGAUGCAGCUUAUUGCUUGUAUUGUUAUCUUUUCUUUUAGCUAGGAAAACCUAAAAAUUUGGAAGUUCUGUAUUUGCUAAGGAAGGUUUUGUUAAUUGGAAGAAAGCUAAAGAUAGGCUUGCUACACAUAGUAAUUGUAAGACUCACAAUGAUACUAGGAAAAAAUGCAAAGACUUUAUGAACCAAAGGACAAGUAUAUUUAGGAAAAUUGAGAUUGUUAGCAAGGAGGAAGACAUUAGAUACAAGAUUCGGUUGACAUCUUCUUUAGAUGUUAUAAGGUUUCUCAUUAAGCAAGGUGAUCCUUUCCGUGGACAAGAUAAGACCAAUGCAUCCCUCAAUAAGGGUAAAUUUAGAGAGAUGGUUAAUUGGUACAAAGACAAGGUCCCAUAAGAGCAAUAAAAAUUGCCAAAUGUUAUCACAUGACAUUCAACAGGAUCUUACUAAAGCUUGUGCAGAAGAAGUGACGGCCGUGAUUAUGGAUGAGAUUGGACAUUGAAAUUUCUCCGUGCUUAUUGAUGAAUCUUGUGAUGUAUCGAUAAAUGAGCAAAUGGGUGUCAUCUUGAGAUUUGUGAAUGAUGGAAGGGAAAGUGAUGGAGAGAUUUUUGGGUCUUAAACACAUUGAGAGAUGUACAACGGUUGCAUUAAAAGAAGCUUUGGUUGGUAUGCUUUCUAGUUAUAAGUUAAUCAUCUCUAGGAUUCGUGAGCAGGGUUAUGUUGGAGCUUCUAAUAUGAGAGGGGAAUUUAAUGGUGUGCAGAAAUUGAUUAGGGAUGAAAACCCUUUUGCUUAUUUUGUCCAUUGUUUUGCCCAUCAAUUACAGUUAGUGGUUGUUACUGUUUCA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
28.86%
ME_num:
MEP:
51.22%
HE_num:
HEP:
19.72%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
callus
Tau :
0.77
Avg Expression:
11.88
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | IR64 // panicle // Dawn--/--IR64 // panicle // Dawn + 10.5h | -2.73669717915505 | 0.0499804312672507 |
| 2 | Nipponbare // shoot // Drought_during_3_days;_mock_inoculated--/--Nipponbare // shoot // Drought_during_3_days;Fr13_inoculated | 1.37312689939843 | 0.0148622022591501 |