Chr:
Chr6
Start:
14312630
End:
14316538
Strand:
-
Ref_name:
LOC107281200
Sequence
(XR_001546550.2):
AGACGCGUCGCCACUCUUCACCCACCAUUCCAGUGCCGAUCCAUCCGAGGGAGAGCAUCCUCGCUGCUCUUCUCCACUGGUUCUCCAUCGCCGGCCGCGAAGAAGAUGAUGGCCGCAAUCGUUGAUGAGCCGCGGUCGUUUCCUCUUCUCUUGCGUUCCAUACUCUCCUCACCAUGCCGAAUAUUUCUCCUUUUGAUUUCAUCCUCUCUGGUGCAGCCAAUCGACGGGAACGCUGCCGUGCACACCGGAGCUCUGGAGCGCGCUCUGUGCACCGCCGCAGUGACAUCAUCGCCGUUCCCGCUUAUCUGGACCAAGCCGGGCCAAGCUGUCGCGCCAGCGUCUUCGCCUCGACCUCCUCUCCAUUUCCCCUCAAGAAUCUCGAAGGAUGGUGCUACGAGUGUGGAGAUCGUCCACCGUCUUCUCCACCUCCGGUCACCGUCGCCGUUGCCGAAUCCACCCCCUCCGUUCUUGGAGCUGAUUGAGCCAUCGCCGUUCACCCGGAGGUUCUUGCCGCCGCCGAGCCGUUACACGAGCCGCCGUCAUCAACCUAGCUACCCCAGCCAUGUCUAGCAUCUCGAUGAUUGCUUAAUCGGUGAAGAAGUGAUUUAGGUGCUGACAUUUUCCUGAUUCAAGGC
Sequence
(XR_001546551.2):
CCAGACGCGUCGCCACUCUUCACCCACCAUUCCAGUGCCGAUCCAUCCGAGGGAGAGCAUCCUCGCUGCUCUUCUCCACUGGUUCUCCAUCGCCGGCCGCGAAGAAGAUGAUGGCCGCAAUCGUUGAUGAGCCGCGCCAAUCGACGGGAACGCUGCCGUGCACACCGGAGCUCUGGAGCGCGCUCUGUGCACCGCCGCAGUGACAUCAUCGCCGUUCCCGCUUAUCUGGACCAAGCCGGGCCAAGCUGUCGCGCCAGCGUCUUCGCCUCGACCUCCUCUCCAUUUCCCCUCAAGAAUCUCGAAGGAUGGUGCUACGAGUGUGGAGAUCGUCCACCGUCUUCUCCACCUCCGGUCACCGUCGCCGUUGCCGAAUCCACCCCCUCCGUUCUUGGAGCUGAUUGAGCCAUCGCCGUUCACCCGGAGGUUCUUGCCGCCGCCGAGCCGUUACACGAGCCGCCGUCAUCAACCUAGCUACCCCAGCCAUGUCUAGCAUCUCGAUGAUUGCUUAAUCGGUGAAGAAGUGAUUUAGGUGCUGACAUUUUCCUGAUUCAAGGC
Sequence
(XR_003242722.1):
CCAGACGCGUCGCCACUCUUCACCCACCAUUCCAGUGCCGAUCCAUCCGAGGGAGAGCAUCCUCGCUGCUCUUCUCCACUGGUUCUCCAUCGCCGGCCGCGAAGAAGAUGAUGGCCGCAAUCGUUGAUGAGCCGCGGUCGUUUCCUCUUCUCUUGCGUUCCAUACUCUCCUCACCAUGCCGAAUAUUUCUCCUUUUGAUUUCAUCCUCUCUGGUGCAGCCAAUCGACGGGAACGCUGCCGUGCACACCGGAGCUCUGGAGCGCGCUCUGUGCACCGCCGCAGUGACAUCAUCGCCGUUCCCGCUUAUCUGGACCAAGCCGGGCCAAGCUGUCGCGCCAGCGUCUUCGCCUCGACCUCCUCUCCAUUUCCCCUCAAGAAUCUCGAAGGAUGGUGCUACGAGUGUGGAGAUCGUCCACCGUCUUCUCCACCUCCGGUCACCGUCGCCGUUGCCGAAUCCACCCCCUCCGUUCUUGGAGCUGAUUGAGCCAUCGCCGUUCACCCGGAGGUUCUUGCCGCCGCCGAGCCGUUACACGAGCCGCCGUCAUCAACCUAGCUACCCCAGCCAUGUCUAGCAUCUCGGAUUUAGACUUAGCCUUUG
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
35.77%
ME_num:
MEP:
32.32%
HE_num:
HEP:
31.71%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
caryopsis
Tau :
0.97
Avg Expression:
338.99
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hN | -6.37649321822844 | 3.26419689583054e-37 |
| 2 | Caidao // leaf // none (control)--/--Caidao // leaf // 0.5% Na2CO3 solution for 36h | -6.27414154679942 | 0.000234646283582808 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hN | -3.01983772756465 | 3.5388078844684e-32 |
| 4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN | -9.83713438664587 | 5.35443901651972e-16 |
| 5 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dA | -7.97934435713965 | 1.18225277613915e-13 |
| 6 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN | -10.0495384742265 | 1.62113358045766e-16 |
| 7 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA | -10.2162286829255 | 4.89656445643393e-17 |
| 8 | Vialone_Nano // leaf // control--/--Vialone_Nano // leaf // 100 mM NaCl | 3.00319799726633 | 0.0421011423090643 |
| 9 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hA | -4.10312141404738 | 1.06848874911373e-59 |
| 10 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_BLS256 | -4.05250740021177 | 2.5826272292404e-09 |
| 11 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_CFBP2286 | -3.45555645059956 | 8.36339003644338e-08 |
| 12 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_BLS279 | -3.19451437745001 | 3.33984712679008e-05 |
| 13 | WD20342 // leaf // none (control)--/--WD20342 // leaf // 0.5% Na2CO3 solution for 36h | -10.0885820089669 | 3.13468259395437e-11 |
| 14 | Vialone_Nano // root // control--/--Vialone_Nano // root // 100 mM NaCl | 5.3931015932025 | 0.00311362797060841 |
| 15 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA | -8.83395474832148 | 2.9130277140708e-18 |
| 16 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN | -7.23060778969078 | 1.14376343351778e-40 |
| 17 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_B8_12 | -2.63092940081045 | 0.000433705719371556 |
| 18 | Nipponbare // leaf // Watered;Long_Day--/--Nipponbare // leaf // Drought;Long_Day | 7.2826883271944 | 1.54399907560811e-15 |
| 19 | Nipponbare // panicle // AM--/--Nipponbare // panicle // PM | -4.79862336074694 | 0.000291253580738882 |
| 20 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hA | -7.66060448968515 | 6.24402552903942e-24 |
| 21 | Nipponbare // leaf // Watered;Short_Day--/--Nipponbare // leaf // Drought;Short_Day | 8.84907808521096 | 2.27031641658938e-11 |
| 22 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA | -10.2618284100429 | 2.1356206499607e-17 |