Chr:
Chr6
Start:
19066527
End:
19068712
Strand:
-
Ref_name:
LOC107281189
Sequence
(XR_001546515.2):
UCUCUCUCUCACGGGGUGCGCAGGGGGAAGGUGGGCGGCGGCGCCACGCGAGCGGCUGUGGCGGGCGCGGCUGGGUGGCGAGCGGCGGCGGCGACACCACCUCCUCGCCGCAGCCGCUCCUCCCCUUCCUUUCCCCUUCUUCCUCCAGGUCCGGCGGUGACGGCGCGGAGGAGCCGCCGCGGGGGCGUUGUCCUUCGUCACGGCCAGUGUUCGCGCACAACGCGCGCGUGGUGGCCGCGGCGGCGUUCAUGCUCGACCUCGGGGGCCUCCUGGUGUUCGCCGUGCUGCAUUGGCCUUGCCUGUGCGUGCUAUUGGGGGAUUGAUUGGUUUUGGUUUGGAACGAUUCGGGCGCCAUGAUCCGGAGGAGGAUUCAGUGAACUUCCGUCGCGGUUGCUCUCCGACCGAAUUUUCACGGCCGUAUUUUUCUUUCGGUGGAUGGUUUUUGUGUCAUGGGGAGUUGCAGCGAAUGGAUGCGAUGUAGCCACGCGUGAUUCUUGCGAGGUCGAAGGGCAGAGUGAUGGAUCUAGUAAAAGAAGUGAGAGUUUUCCUAUCUGAUUAUCUCGUCCUCCAUGGCAUUCAUGAUCAUGAAGCCUAGCUUUGGCUAUAAUUGAUACGGAGUGUUAGUUUCCAUCUACAUCUGCAUUAUGAUGCCGACGCUUAAAGUUCUUUUCAUUCAUACUUUUGCAAAGCACACCAGUAAUGCAAACAGUCUUAUAGUCUUAUGUGAUGAUACCUUCAGUGCAAAAGUUAUUCUGAAGACUGACAAGCCGGCAGCGAGAGGAGGAAGAAGGGGAGAGGCCGGCAGCUGGCCAAGGCAAGCUCCUCGUCGUCGUCGUCCGUGGCCUCGUCGACGGCGUCGUGGGCCAGCGGCUCCACCGUCAUGGACUGGGUGAGCCCCGAGACACCGUCUCGCGCCGCUGCCCACUGCCCAGCCCCGCGCGCCGCCGUCUACCGCUCCCUCGUCUCGCGCCGCCGCCUCACCUCGCGCCCCAGCCUGCCCCUCCGCGCCGCGAAGGUGAGGUCGGAGCGGUCGCAGACGCGGUCGACGGCUCCUGCCGGUUCCCCCUCCUCGUUUCGCGCCGUCGCCGCCGCACAUCGCCGUGCGCGCCUGCGGCCACGCGAGAGAGAGAUUAGGAAUAUUUGAAUAAGUGAAGAGGAGGUACGACAGAUGGGUCCCACUAUAUUUUUUAAAGAAAAAUGUUGACUGGAUUGCCACGCGGACGCCACGUAGAACAAAACCACUCUAGAUUGAGUCGAGGGGGGUAAUUCGUCCGGUACUAAAAUUUUAGGGUGAUCAAUGUCUGGUUUUCUAGUUAGGGGGUAAUUCGGUCGACCAUGAUAGUUCAGGUGGGUAUUUCGUACUUUUUCCUUUUUUUUUUAACUGCAAAAUGACAUGGAUGGAGAUAGAUGUAGGCAGCAGUGAACUGCACUGAACCCGCUCUUAUGUACAACAUUUACCUGACGUCUUGCAUAUAUAUAACCAGUGCGAAACCUUGAUUCAUCAUUUGGUUUGCUUCUUGACAUCACUCCUUUUGAUACACACGCUGCUCAAGUUGCUAUGAGGUCCAAUCACUAGAGCUCGUGCCAGACAAUUAAAUUUACAGUAACUAUGGGAGAAGACCAUGAAGAUAGACAAGGUCAUUAUGGACGUAAGUCAAGAUGAAGGUCUGACCCAUAUCUAGUUCGAGUCUACUUCGGGCUCCAGUAGCAGCCCACACUAAAUUUGUCGCCCAGGUUGCAUUCAGACUCCGAUUUCUACGUUCUACGUAUGUAUGGAAAGCAGACGAGACCACCUUUCUAAUGGAUCUGGCCCUACGUCAAAAUUCCUUCCAAGUCAUUAGGAAUCUUCGCAACAAGAAAGAUUUCAGAAUCUGUCCAGGUGCUGCGUCACCGUCUUUGGGCCCAUUGGGCCGUGUAUCGUGUUGGAAUCUAAUAGGGAUAUGUCCAUAGGCCUAAGGUCGACCCUAGAAUGCAUAUAUUCAGUAGCCGUCAUUGAUUUAGGGUUGGGUUAUGCUUAGAUUACUUCUGCCAUUGCAGUUUUGCCGUUAGAUCGGUUUGUGGAACCCCAAAUUCGAGUGCUUAAUUAUUCAUAUGCAGUUAAGUUGCUAUCUA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
57.32%
ME_num:
MEP:
42.48%
HE_num:
HEP:
0.0%
Type:
MCR ()
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
callus
Tau :
0.64
Avg Expression:
1.41
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hN | 1.309013443501 | 0.0353615824530616 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dA | 1.95783414135036 | 0.00163885108447016 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hA | 1.59122787368739 | 0.00253271407243826 |
| 4 | WD20342 // leaf // none (control)--/--WD20342 // leaf // 0.5% Na2CO3 solution for 36h | 3.44877386497014 | 0.0423319398038887 |
| 5 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA | 1.43696520177907 | 0.00876455593380856 |
| 6 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hA | 1.41539034215418 | 0.0208395198189383 |