Chr:
Chr6
Start:
6619020
End:
6620292
Strand:
+
Ref_name:
LOC107281169
Sequence
(XR_001546400.2):
UUAGUUUUUGUGACCCACUACCAACAGUGAAUCGACGAUUCUCAGCCCAGAAAGCCUGCUACAGUACUACAGGACCUCACCCUUGAUGCACCGUCCGGGACGAUGUCCACGGGUUCAUCGAUCCAUCCGUCUACGCCUCAUAGCCGCAUCACCCCGAUCCCCUCCGUCAUCGCUCCUAACCAAUCAGCGCACCCAUCGUCCCAAAAUCCCCAAAUCUUCAUCGCCUCCUCGUGAGGUUCGUCGGCGCCGACACCGCCUUCUUGCGGAGCCUGCGGCCAGCGUCGCCGCUUUCUUGUCGAGCCAGCGAGGGAAAUCGCGGCGCCAUCUUCGCCGCCCUCGCCGGACCAGCGUCGCCACGGAGCUAGCCGGCGGCAUCUGCCUUCUCACGGAGCCAUCGGGCAAGCGCCGCAGCCGACCGCCGCCCUCGUCUCUUCGGCGAUCCAGCAGCUGCCGCCGCCUUUCGUCUGCUAGCUGCUAACGGUUGUCCAACUAGCUCGAUCCCUGUCCGUGCUGCUCCGUAUCCUCUUUCAUUCGUCAAUUUCAGGUAUAUAUCCAUAUAAAGUAAUCUUAACGAAAGAUAAUCUUAUAAAGAGAAAUUGGAGGGGAAACAAGCAAUGUUGUUUUUUAAUACAUAAGAGACCAUCCAACAUUUUUUUUUUGACUGUCAUGUUGCACAUUUUGCUUGGCGAUGUGUCUUCUUUGCCUUCAACAUCCCCCUCCCCACAAUGUAAAAGAUAUUUUUGGUGACCAGUUAAGGGGAGUGCCUAGACAAAAAAAAAAACGAUUUUGUUUGGAGCUAGUGCUUUAUGUUGGUCAAUUUGGCGUUGCCGUAAUGAUAUAGUUUUUAACCAUAAAAAAAUGCCUAACAUCAUGCAAGUUAUCUUCAUGUGUUCCAAUUGGCUCCACUCUUGGUGUAUGAUGCUUUCACAGGAAUAACAGGAUACUAUGCGCAAUGGUGCUACACGCUUGGAAUUAGUAGUUAAGGAACUUUUAUUCCAGUUUGGAUGGCGUAGUACCUACAGAAUUUCGUGAUAGUAUCUAUGUGAUUUUGAAAAAAAUAUUAUUUUAGUAGAUCAUAUCAUCGGCAUAAGUUGGGGGUUUGUCCCAUCUGGCUAGUUAUAUAUGUAUGCAUGCAUCCAAGUCAAUUAUUGAUUUUUUUUCGAUUA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
18.5%
ME_num:
MEP:
77.85%
HE_num:
HEP:
3.46%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
crown
Tau :
0.75
Avg Expression:
4.96
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN | 2.40533547878848 | 0.00557637594274568 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dA | 2.84624652582065 | 0.00390756117700387 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN | 3.06639740179701 | 0.000529042057920422 |
| 4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hA | 2.01605721233385 | 0.0403597908559997 |
| 5 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_BLS279 | -1.83138162916126 | 0.0125436161108879 |
| 6 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA | 1.98287956641646 | 0.0351691361933772 |
| 7 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN | 1.92413415207949 | 0.0360591311319449 |
| 8 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_B8_12 | -1.34127677144155 | 0.00799352507554479 |
| 9 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_RS105 | -1.57789370651121 | 0.0231642172979209 |
| 10 | Nipponbare // leaf // Watered;Long_Day--/--Nipponbare // leaf // Drought;Long_Day | -1.58216524006571 | 0.000555635365819101 |
| 11 | Nipponbare // leaf // Non-inoculated--/--Nipponbare // leaf // Inoculated with Pyricularia oryzae | -1.2077525676025 | 0.00548394937121776 |
| 12 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hA | 1.97504292685464 | 0.0480248673228966 |
| 13 | 9L136 // leaf // control--/--9L136 // leaf // salt | 1.00198978261517 | 0.0365492323541733 |
| 14 | Nipponbare // leaf // Watered;Short_Day--/--Nipponbare // leaf // Drought;Short_Day | -1.46028169007858 | 0.0240328158213665 |