Chr:
Chr6
Start:
16700638
End:
16703297
Strand:
-
Ref_name:
LOC107281156
Sequence
(XR_001546350.2):
GCCCCCUUCCACCGCGCGCGCCUUUGUCGCCAUCCACCGCCCGCGCCGCCGCCUCCUCCGCCAAAUCCACCGCGUGCGCCCCCCGCCACCGCGCACCACCUCCUCCGCCAAAUCCAGCGCCCCCCGCCUGCUCGCUCCUCUCCCACCACGCGCCGCCUCCACCACGCAGCCCCCUCCGCCUCACCCACACCGCCGCACGCCGCCGUCGACUCCAUCGGCCAGCCGCCGCUACUCCCUAACUCCGACUCCACUCAAACCCUCCCCUCCUCCCCACCUCUGACUCGACCUGCACGCUGGCUUCCGCUAUCGGCUCCUCCGCCCAACGCCUUCCCAUUGCCGCAGUUGACUCCACCCUCUUCCCCACCUCCUCCGCCGCCUCCCCAUCGCCUCCACCUCUGGUGCCUGCCUCCACCUCAUCUUCCGACAUCAAGGAAGUCCCCUUGUUCAGUUUAGUUUGCCACUAUCGAUUUUGCUACAAUCGAUCUAUGUUGUUGAGCAUCUACCAAGCAGGAGAUCUAAAAAAACAUCGUACCACGGUCAAAAUCGAAAGGGCUACUGAAAUUGUUCUGCUAAAGAUGUCACUUGUCCCAGAAAUUGUCCAUUGAAGAUUUUUUUUGCUGAAGUUAUUUAUGAAUGGAGACCUGCUAAAGAUGUCACGUGUCCAAUAAAGACCUGCUUAAGAUGUCACUUGUCCAAUGAAGUUCUCUCUGUAUUUAUAUUAUCUAGAAGAGAUGCCACUUCAAUGUAGAGUAAUUCCAUAAACUUUGUUGAGAAGUUAUGACUUAAAUUUAAUGAAUGCUAAGGGUGUGUUUGCAACCCCUUUUUCCCAA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
0
LEP:
0.0%
ME_num:
MEP:
1.22%
HE_num:
HEP:
98.58%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
pistil
Tau :
0.54
Avg Expression:
83.97
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hN | -1.09286611435902 | 1.75306050109468e-05 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hN | -1.26773835200083 | 2.04168791904398e-06 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN | -1.31984411919645 | 5.22346328977206e-06 |
| 4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hA | -1.07590744067491 | 2.1112066465771e-06 |