Chr:
Chr5
Start:
29690979
End:
29692119
Strand:
+
Ref_name:
LOC107281154
Sequence
(XR_001546316.2):
CGACAUCGUCGCCGCAGCAGAGGGAGAGGGUCGGGGAGGAGCUCGGGGAUUGGGCGCCGCCGGAGUGGGCACUGCUGCUCAUCGGCUGCCUCCUUGGGCUCGCCACCGGCAUUUGCGUCGCCGCGUUUAACCGUGGGGUACCCCCAACGAAGGUGCAGCUUGGCUCUGCCUUCAGAGGCUAGCUGAUACUUGGCACAGAAUACUGCUGAUCCCUGUGACAGGAGGCGUUGUUGUUGGAAUGAUGCAUGGGUUGCUUGAGAUAUUUGAUCAGCUGAAACUCGUGAAACCGCCUCAGAAGCAAGUGGCCUUCCUCCCGAUUCAAUCCACCCUAGUCCCUAAUCAAUCCUUGCUCUCCUUUUUUCAGAUUCUAUGUAUAUCUAUCCUCCCUGAUUCCUAUAUGUGAUUUAUUACUGAAACUUCAUUACUUGAGGUAUUUUUCAAUGCCUAUUCUUCUAUUUAGGCUUGUUUGCAAAUGGAUAACGGAUUGUGAUCA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
6.91%
ME_num:
MEP:
54.07%
HE_num:
HEP:
38.82%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
coleoptile
Tau :
0.59
Avg Expression:
9.38
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN | 1.49223647926819 | 2.09338338028557e-06 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN | 1.50953441972321 | 2.03330886217918e-05 |
| 3 | IR64 // panicle // Dawn--/--IR64 // panicle // Dawn + 10.5h | -1.00471236414783 | 0.0210130952818434 |
| 4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA | 1.01974141393911 | 0.00221355807492829 |
| 5 | Nipponbare // leaf // Non-inoculated--/--Nipponbare // leaf // Inoculated with Pyricularia oryzae | 1.48135873840029 | 0.000135484839305767 |