Chr:
Chr5
Start:
809585
End:
812413
Strand:
-
Ref_name:
LOC107281148
Sequence
(XR_001546297.2):
CCGCCGCCGCUCCACCCCACAAACCCUAAACCGAUCUCGAGGGGGGCGUAGCCAGUGACGGGAAGUCCACCGCCGCGCCACGCCUCGUCGUCGACACCAUCGCUGCCGCAACCGCGUCACUGCCUGCGACCGCUGCUGCAUCACCGCCAUUGGCACCAAGCACACCGUCGCCGCCGUCCACGUCGAGCCGCAACGACAGCGACGAUGUCCGGCGCCCUUUCCUCCACGAACACCUCAACCGGUGGCUACUCCUUGAUGGGUUACAUUAAAGAUAUUCUGACCCUGACAGGAGAUAACUACGGAGAAUAGAAAAGAGAACUCGACCUUGCUUUUAUCUUGGGAGAGGUGGACUGGGUGUUGACUACCCCAUGUCCUGUAGAACCUGCUAAACUUUUCAAAGGUGAAAAAGAGUUAGAUGCUGAAUGGCAAAAGAGAGAGAGGGACAAUGCUUCCCUCAUCAUGUCGUAUGACAUUGAGCAUGCGAAAUGGUCCUCAGCCAACAAGAACUGUUUGGCUGCGGUAAAGAACAUGAUUGAGCCAACCAUAUUGGGCUCAAUCCCAGAGUAUGACACCGUCUCUAAGUACCUCGAGAGUAUAAAGAGCCAGUUUACUGGUUCUUCAAAGUUUUAUGCGACACAGCUAAUAAAGCAGCUUGUGACAGAGAGGUACCAUGGUGAUGGUGUAAAAGACUACAUUCUUAGGAUGAGCAACAUGGCUUCCAAGUUGAAGCAAAAAGAUUUGGGCAUCUCAGAUGACUUUCUGGUCCAUCUGGUUAUAACCUCAUUGCCAAAGCAUUUUGACAACUUUGUUGUCAAUUACAAAAUAAGUCCAGAAAAAUGGAAUCUUGAAGAGCUCAUCUCUAAUUGUGUGCAAGAGGAGGAAAGAAUCAAAGAGAUCAAUGGUGGUUCAAGAGGAGGAAAGAAUCAAAGAGACCAAUGGUGACUCCAUUAACCUUGUUAAAGAUAUCAAGGAAAAGAGCCACAGGUCACCCUCCUCAAAAGCAAAACAGCCUCAGUAUCUGCCUCAACAACAACAGUUCACAGUUGAGACAGGAUUAGUGUCUCCACUGCAAGAAGACAAGACAUUCCAAGAAAGAUCAUCCUGACUUCCUGAUAGUGAUCAUGGCAAAAAAAGGGAUUCCGUUCAAUGAGGACUAUGCAAAGAAGCGAAAGAUCCAUUAGAGUUGCCAAUGGAGUUGAAGCAAAAGUUGAAGUUGCUGGAGAUCUUUGCCUAGAGCUCGCGAAUGGCUUCACACUUUUAUUUCGAGAUGUUUUUUAUGUCCCUUCUUUGCAAAGAAAUAAGUGUACCCAAAUUGGAUUUUGAUGGAUAUGAUUGCCAUUUUGGAAAUGGAAAAUGUGAACUAUGGUAUAAUAAUGCAUGUGUUGGUCUUGCUCUGUUGCAAAAUCAGCUUUACUUGUUA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
20.33%
ME_num:
MEP:
69.31%
HE_num:
HEP:
10.16%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
caryopsis
Tau :
0.64
Avg Expression:
7.20
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dA | -1.5818588503613 | 0.00369011743746205 |
| 2 | Nipponbare // shoot // No_DIS;Fr13_inoculated--/--Nipponbare // shoot // Drought_during_3_days;Fr13_inoculated | 1.05252972647348 | 0.00291195105026978 |
| 3 | Nipponbare // shoot_apical_meristem // 0_days_after_shift--/--Nipponbare // shoot_apical_meristem // 4_days_after_shift | 1.53099742649083 | 0.000747554153196374 |
| 4 | Nipponbare // shoot // Drought_during_3_days;_mock_inoculated--/--Nipponbare // shoot // Drought_during_3_days;Fr13_inoculated | 1.13384506719793 | 0.0149097970421422 |
| 5 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA | -1.1022672876236 | 0.0010832674745146 |
| 6 | Nipponbare // panicle // AM--/--Nipponbare // panicle // PM | 2.97459665110061 | 4.98869896536161e-09 |