RiceNCexp
Rice Non-coding RNA Co-Expression Atlas

OSA-LNC107281146

Function Link

Tissue-specific Expression analysis
Differential Expression analysis
Co-Expression Curve
Network analysis

Basic Info

Chr:

Chr5

Start:

21451507

End:

21457150

Strand:

-

Ref_name:

LOC107281146

Sequence
(XR_001546284.2):

UCGCGCCAUUGGUAGCCUCGAAAGGCAGCAACCGGGAAGAGGGAAGAGAGAUGGGAGAGAACGCGAGAGCACGGGCAAAACUAGGGUUUCGGGUUGUCUCGCGGAGGCGGAGAGGCCGCAAUCCCUCGUGCUCUCCGAUCCUCCGGAGCCCCCGCCGGCCACGGGGAGCUCGCCGAUCCGAUCAACCGGGGUUCCGGCCUCCGGCCCCGCUUCGGCGGGAGGUUUACUCGUAUCCGCUUCCCCUACCGUCUCGUCUUUGCAUUUCCGCUCGCUUCGAUUUCGCCGUGGCUUGAUGCCUCUGAUCUCUCUCGUUUUGCUUGGAUUUUGCCGUUGGCCCGAUGAUGAUUGCGAUUUAGACCCUCGCGAAUCGAUCGAUUGGUUGGUUGGUUGAUGGAUGGAUAGAUAGAUCGGCUCGGAUUUGAGGCUCGCCCUUUGCAUCUGCAAGCGGGUUGAGGUCCCGAGAAUGGCUAGUACGGCGUUGGCUCCUCGAUGAUCUGGGCGCUGAAACAUGCUGGGGGGGUCGGAGAGGCACUGACAUGUGGGCCCGCCCACGCGGCAGGAACAUGGUUUACUGCUGCUUCUGCUAUACUAUAAAACCUGCUCUUUUUCUUUCUUUUUUCUCCUCUUCCUCCUCCUCCUCCUCCUCUCUUGCCACCGCUGCGGCGGGUCGUCGUCGUCGUCGUGCAUCAUCAUCAUCGUCCUCUUCUGCCGUACCCUUGAGACAUGCUCCAGUGCCAGCGUCGAGGGCCGCCGCAUUAGCCUAAGAUGGAAAACGAAGUUGUGAAAUCUGAGGGCCAAUUGGUAAUACAGACCUUUCUGUCUUCUCGUUUGGAUCUUUCGGUUUUGUUGCUUGCCUCUCUGACUCUCUGUGUCUACUUAAUAGCCUGAUGUAAUGCACGAAAUUGGUCCAUUGCCGUGUAAACAGCACGCACGUAAUGUAUCAUGGUUGGAGAUGUCUGAGUGAUUGAUCUUCAGAACGGUUCACAUCUCUCCACUUGUCUAUUGCUAGCAAUUGCAAAAAUAUCUCAACUUAUGCUACUACAUUGUUUCUGUUUUUUGUGUUAACAUGCCUCGUCGAGUUCUAAUUUUGAUUUACAAAUUGGAUGCCCGUCUCUUGUGUCAUCUUGAAAUGCAGAGGUGCAUUUAUGUCUUAAGCCAGAGGGCAUUAGGAUCAUACUGUUACAUACGUUCUGGUUCAUCCUUGUCUCAUUUUGUAUUCCUUAUUAUUUUUUAUCAUCUCCCGUAUAAUGUGAUGAAUCAAGAGCCUGCAAUAGGCAUGAUCUUGACUACCAUCUGGUUCAUAUUAUUUUUUUUCUUACCAUGUUGCUUUGGUUGGUAGUAGCAUGAUGAUGCAUUGCCCAAUGAUGAAAACUUACUAUGCAGAGAUGGCACAUGGUUUCCUCCUCCUCCUCGGCUCCUCCUCCCCCCUCUAUCUCCCCCCUCAUGUGACAGCAGCAGCAGCAGCAGUUGGGAAUUGCCAUCAAAAGGAUUUGUCUGGAAUACAGGUACCGCUAAGUUUUAGCGGGAAAAUCAGAUACCAUAUAUGUUGCCAUAAAUGAAAUGCAUAAGUGAGUCUUGAGGGCAUAACAUUCCUUGCAAAUGCACAAGCUGUAUGUUUUUUCGAUAUUUUUAGUCUACUAUUGCCCAUUUUACCACCUCAACUUCCUGGUCAACCCCAAACUACAUGUUCAAGAACUAUCAAAGUUAUUGCAACUCAUCCCAUUGCUGAAACCAAUCCGGUGAAAUGCGUACAAAUGGACGUAGUGGACCCGGUGAAAUGCUCAAUUAGCACAAUAAAAAUUUGCAUGGCUCCUCACAUCAUACUCAAAACACACCUAGGCAGCAAAGAAACUAUUUACGUGGGUACAAAUAUUGAAUGGUCACUGUUUUUUAACUUGCGGACUUGAGCAAGAGUUGAGGGGGUUAAUCAAAAUGGACUUAGUACUUUCAAAAUUUUGUUCCCUGCAAGUUUGAAUAUGUUGGCUUGAUGAGAGGCUUUUCAUUUGCACUUCCUUCAGUACAUUUUUGCUGUGGUUUGUGUAGGUUUGUUCUGUUAAACUGUUUAUUGUGUUUCUACUCUAACCUUUCUGUUUGUUGCUCGGCCAGUAUUUUCGUCUCAUUUUUAACUGAUAGACACCCAGCAGAGCUGACUCUUUAACUCUUCCCAGAUGACGGUUCCUAGAUACUCUUAUUGACUUAUUCUAAGUCAGCUUGUGUUUGUGCUCCAAGUGAUAAGUUCGACACCUUUUCUAGGCUAGAGCUUCUGAGGGUUUUCAUUCUGCAGAUUGACUAGUUUAUUACUUUAUUUACACUGUGAUAAGUUCAUUUGUUAUUUUUUUCAUUGCCAUGUUAUUUAUUUUGUUCAAGAAACCAGAGUGUAUUGAAGUGGUACCUUUUGGACUUCAUGACAGUCGUCCAUAUCAUAAAACCAAAUCACUAUCCACUUAUGAGCCAUGAUAUUUUGAGAAAUAACUCAUUUGCUUCCUUUCUUAAUCCCCUUCAUACAAUCAAUCAAGAACGUGACUUCCCCUCUUUUUUAUGACUUUCCUUUUUAAAAAAGGAAAAUUCUCACUUGCACGAUUUCCCCUCCUUUUCUCUUGGUUGAAGUUUUCCUUGUUCAAGACCACGUAGUCAUAUAUGUUUCCCCACCUUUGCAGAGCAUCUGGAUUUGAUUCUGAAUUGGACCAAUGUUUUAUUUGAUUCAGACUAGCAAUUUCACCUAAAUUUAGUACCUUCUGCAGUAGAAUAACAGGUACCAUGCUUUGAUUUAGUUGAUUUAAAUGCCCAGUGAUGAAACAUGAUUUACAGAGAUGGUGUUUUGCUUCCUGGAAGUGCUGUAUGAUCUGUAUCCAUCCAUCCGUCCUCUCUCUCUCUCUCUCUCUCUCUCUCUCUCUCUCUCUCCUCUCUCUCUCUCUCUCUCUCUCUCGUACAUGUCAUCAUUUGGAAUGGUUCAUUCCAAUGAUUGUGCAUGUGUAGCUAGCUAGCUUAACCUUCCAUCAUCAUUCCAGGAAUUCAUUCAGCCUCACAUUUCCUUGCUCACAAUUUGAGGCUGUCUCCUGCACCAUCAAUGGAUACUGUGUAUGUGAGUUCUGAGGGCAUUAUUUUUCUUAUGGCACGUUUGCCAGUUCGUUUGAGAUGAGUCCAUCCAUGGAUGGUCCUUUUUCUGGUGCACCUGUCUCUUAUGCAUUUCGCUUGUUUCGUUUUCACUGUGGCAUGGUGCCUCUGAUCUCUCUCGUUUUUGCCUGGAUUCGCCAUUGGCCCAAUGAUGAUUGUGACUAAGACCCUCGUGAAUCGAUAAAUCGAUUGGUUGAUGGAUGGAUGGAUAGAUAGAUCGGCUCGGACUUGAGCUCUAAUGGGGUUGCCCUUUGCAUCUGCAAUGGGUUGAGCUGAAAAUGGCUAGUGUGGCGUUGGCUCCUCAAUGAUCUGGGCGCUGAAGCAUGCUCAGGGGUUGGAGAAACACUGACAUGUCGGUCCGCGCAAUUGGCAGGACCAUGGUUUCUGCUGCUGCUUCUGCUUUGGAAAAGUAGCUCUCUUUCUUUCUUUUUCUCUUCUUCUUCUUCGUCCUCCUCCGCUCCUGCCACUGCUGUGGCAGUUGUCGUCGUUGUCGUCGUCAUCGAUCAUCAUCAUCCAGUUCUGCCGUUCCCUUGAGACAUGCUUCAGUGCCAGCAUUGAGGGCUGCCGCAUUAGCCAGCCUAAGAUGAAAAACAAAGUUGUGAAAUCAGAGGGCCAUUUGGUAAUAUCGACCUUUCAAUCUUUUUGUUUGGAUCUUUUAGUUUUGUUGCUUGCCUCUCAGACUCUGUGUCUCCUUAAUAGCCUGAUGUAACUCCCAGAAAUUUACUAUCUGACGGAGUUGGUCCAUUGCCGUGCAAACAAGUACACACUUAAUGUAUCAUGGCUGCAGAUGUAGUGAUUGAUGUUCAGAACAAUUCAAAUAUCUCCACCUUGUCUAUUCCUCGUAGAUUCAAAAUACCUCAACUUAUGCCACUACAUUGUUUAUCUCUUUUUUGUGUUAACAUAUCUUGUCGAUAUUCCUUCUCUCAUCUAGUUUACCACCUUUUUUUAUUACCUCCUGUAUAAUACGAUGAAUCAAGAGCCUGCGAUAGCCAUGGUCUUGAUUACCAGCAGGUUCAUAUUUCCAUAUUUUUACAAUGUUGCUUUGCUUGGUAGUAGCAUAUCUAAAUGCAUUGCCUAAUAAUAAAAACUUAAUAUGCAUAGAUGGCACUUGGUCUUCUCUCCUCCCUCAAAAUCCAUGCACGAGUAGGGAAUUUGUCAUCGAAGGAUCUGUUUGGAAUGCAGGUACUGCAUAAGUUUUAGCGGGCAAAUCACUGACCAUAUAUGCCAUCAAUGAAAUGCAUCAGAGAGACUUGCCAUCAAUAAAGUUUCCCUGCACAUGCACAAGUUUUUCACCAAGGUUUAGCACUACGUAGGUGCCAUGCUUUGAUUUGAAGCCCAAUGAUGAAACUUGAUAUACAGAGAUGGUGUUUGGCUUUCUGGGAAGUGCUGUACCCAUCUCUCUCUCUCUCUCGCUCUGUGCGUCUCUCUCUCUCUCUCUCUCUCAAAUAUGGUAACGGAAAUGGUUUGAGCAUUUUUCCGACCGUUUUCAUCCCCAACUCGCACACAUCAUCAUUCCCAUGCCUGCAUAUUUGCAGCUACCAACCUGUGCCCUCAAAUAUAAGGCUGUGUACUUUACCAUCAUCCCAGGAAGUGGUUUAGCAUCACAGAUCCUUCACACAAUUUGAGGCUGUCUCCCGCACCAUCGAUGGAUAUUUGUAUGAGCUCUGAGGGCAUUCUUGUUACCAUUUUCAUGUUUGCUUGAGAUGAGUCCAUCUGUGGAUCGUCCUCCCUGGUAUUUAUGUAAAAAUUCGUAAUAUGUGAUGCUCUCUUUAUCUCGUUUAUAUUUGAGAAGCUUUUGCCGAUGAUCAUGUGGCCAUGGUUUAGAGAGAUUAGAACUGGCCUACCGUUAAUGUGAUUUUUAUUUUUCGUCAAAUGUAUAAUCUCGCAGAGGACUCCUGAGGAAACUAUAUAUCAAGUCUGUGCGUUCCUUUUCA

Expression Capacity

HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.

HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.


NE_num:

1

NEP:

0.2%

LE_num:

4

LEP:

0.81%

ME_num:

232

MEP:

47.15%

HE_num:

255

HEP:

51.83%

Type:

HCR (High-Capacity ncRNA)

Tissue Specific Expression

cutoff: tau > 0.9 and Average expression in the tissue > 10


Tissue :

embryo

Tau :

0.94

Avg Expression:

269.61

Differential Expression

cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01


Num. Condition log2(FoldChange) Padj
1Caidao // leaf // none (control)--/--Caidao // leaf // 0.5% Na2CO3 solution for 36h1.795612172153410.00485754954275698
2Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN-2.030410673596164.30680447573273e-157
3Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dA-3.48577749643481.08839960264034e-110
4Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN-2.304839259965192.62385714235634e-181
5Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA-3.45689585228950
6Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hA-1.009906703878711.09421837728502e-40
7IR64 // leaf // ethanol solvent (untreated control)--/--IR64 // leaf // Paclobutrazol (PB)1.305799347821850.0204499464118092
8Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA-3.557143956921930
9Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN-1.280981284317611.6843873116934e-59
10Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hA-1.401609962862142.24758420591562e-55
11Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA-2.461263113162122.41396898865307e-251