RiceNCexp:Browse

OSA-LNC107281137

Function Link

Tissue-specific Expression analysis

Differential Expression analysis

Co-Expression Curve

Network analysis

Basic Info

Chr:

Chr5

Start:

24016049

End:

24022110

Strand:

Ref_name:

LOC107281137

Sequence
(XR_001546251.1):

GCUUGCAGGGCCCAAGUUCUGCUUCCCAAGGGUCUCUUGAGCUUGCUCAAGAACUGCCUGCAGAUACUUCCCUUGGGCUUCUAUCCGCAGCUGUAGAUGCCGUUGUACCUGAUACCAAAUUAGCUUCAGGAAUCCUAUCAGCAACACCUGUACAUCCAAGGGCUGCAAAUUGUCAUCAUCCAUGAGUUGCUAUGUGGCUAUUGUAGUGGUACCUGGAGAUGGCUUUUCAGAUGGUAUAAGAAACAGAUGCCGCUCCAUUGGAAAGGAUGUCCUAGUAGUGAAGAGGUCACUCCGACCCUGAUGUUGGUGAUACAUCUGCUGCAAAAUUAAUACACACUUUUAGAAGAAUGGAAACAUAAAGAGGCAAGCAUUUACACUAUCCUUUCUUACUUGUGUUAUCCAGUCUGUUUCUUCUCUUUGCUAUCACACGUCGAAACUGUUAUGAGUGCUUCUCUUUUGGCAGUGCCAAAGCCAGCACUCUUCUCCAAGCCUAGGUCUAUUGAUACUCUUUUGGUCUUCUCAGGUUGAUAAGCAGUUUGUUGUGAGGGGUUCCUUAUAUGGGGCAACAUAGAAUCUAGCAUCUUGGAAACAAUGAUCGAAUAUUUUUUAUGCCAACUAACAUAAGGUGCUGUCCUUAUAGUUACCUCUGAAAUUAACCACCCCCCCCCCCAAAACAAAAAAAAAGUCUUUAAAAAUGCACUAACCUUUUCUCUUCCUCUUCAUGCUUUUUAUGAAUAAACCAUUUUUCUCUUCCUCUUCAUGCUUUUUAUGAAUAAAUCACUGAAAGUAUGUAUAUACUAUAGUGAUAAGGACUCACAAUUGGAACAAAUUAUUGUUUUGAAUGUUGCUUUCUGGCAUAUCAUUCUGCUAUCUGAUCUAUUUGGAGUGUGAAAGAUAAUCACUAGAUGAAAUUAUUUGAGUACUCUAUGAUCAUAGCUGAUGGAUUGUUAUUUAGUUAGUAUUUUGAAACUGUUGCAUUUUGUUUUGUUUUACCUGUUUAAUGUUUAGUUGUUUAUAGCUGGGUGGUACUUGGUAUGUGUAUAUUUUGUUUAAAUGAAAAAAAGGACACUUAAUGUUAUGGUAGUAGAUUCCUUGUGGGUAAGGACAUCCUACAUAAACAUAAAUUCUGUCAAUUUUAUUCUGUCCUUUACUACUUUAAAGCAUAUGGAAUAUGAACAAGCAUAAGUUCCAUCAGCGUCCUUUCCUAAGAUUGGUACAUAUUCACAUUUCAGUCCAGAGAACUGUGGACCAAGAGGCUUAUGCUUUUUAUGUGAGAUAAGCUCCUUUUGAACCAGAUCUCUUUGAUUGUAAUCAUCACCAGUCAAAGAAACAGUACUUAGGUACUAUGUUUCUGUAUAUGUUUCACAACUAUCAUCAUUUCAGUACUUUUGCCAGUAGAGGCAGAUAGUUUGUUCCAUCGUGCUUCUUAUCUAAGUUCGACAUGAAAAGCUAGAUGUGAUCUGUUUGGAAAUGUAUGCAGGUCUAGCCCCUCCCUUUCCCCCUUCGUUUGUUUCUAAAACAGUAGCACAAUACUAAUUAUAGCGCUUCUUGCUUGGCUCUUAAGGAUGCCUGUACUGUAGAUACUCUGAUCUUAGUUUUGUUGCUCUCCUGUAACCAAGUCUGUCAGAGUUCUUUACAUGUUAUCAUUUUGCCUUAUACCUUAUAUGCAAUUUAUUAAGGGUGUUCACCUACUGUACUUUUGCACCAUUGCUCUUUUCUGUGAUUCGGUUGAUUGAAGAGGUGCCUCAUUAGAAGUGUGCCAAUGGCAUAUGUCGACACCUGGGACCACUAGUAAGAGCUUUCACCUGUCACAAUUUAAUGGUGUUCUUUAAUCAAUGAAAUGAACUAUCAGGAAUAUAUCUCUCUUUUUGUUUCACUGUCACUGGUGAUGUUGCACUUAACUCCCAUUAAGAGCUUUCUGUGAUGGCCACUGGUAUUGCUUACCAUUACAUGCUACUGUGCUAUGUUUCUUUUUCCGGAAGUAAGAACCUCAUGAGAUUUAGGGUAGAUGGGCGAUAUGAGAUUAUUUUAUCUUUGUUAUAUGAUGUUUAUGACACUCAUUUUACCAGUCAUAAAGCUGUUGCAUCUACUGCUGUGUUAGUGCUGAUAAGUGAUGGGUAUGGAGCAUGAUACGACAGUUGUACUGGAGGGUGGGCUGUCGUGCUUUCGACAUAUAAAGAAGUUAUCAAUAGAGAAUCUAAAGCAUUAUCCCAUGCUGAUCAUCUUUUGCAAAGUGGCAUCACUUGUGGGAGCGCAGGCAGUUGUAAAGACUGAUCCUGGUAGCAGUUCUAGAAUUGUAAGUUGCAUAUGACCUGGAACUUUCUGAUCUAUCUUUCAACCUCUUCAAUUGAGUUGCCUCUGCAUCUGCAAGCAUGCCUUGCCUGUUCAACAGUAGGAUUGCAGUGAGUUGUUUGUAUGAGCUAACAAUGCAGAGUCAACACCCCAGGGUAUAGGUGUCUCUUAAUUGUUAUUAUGAUCAGGUCAAUAGAAAAAAAGGGAUAAGAGUUUCUUGUUGUUCUUUUUUUUUUGUUUGUUUAUGUAAGAUGGAUGUUUUUUUUUCUUCUAUUAAUUUUUUGUGGUAAAUAAGGAAACAGUUUUAUUUUUAGAAUCUUUCAAUUGUCAAUAAUAUUGGACCCUUUUAAUUUUCUGACCCUUUUUGCUGAGAAGAGUUCCUUUUCCAAUCUUCUUGAUCAUCCUUUGUAAAUUGGUCAUUGGUACCAUACAAAGCAAAGUACAAAUCCGGUUGGAACCAAGCCAUCCCAGUUGCAUGGGUUACUUAUCUUGUAAAUGUAGGUUCUUUGUCCAGGCACCAUGAGCUUAGUGAAUGAAGGGAUUCUUGUGCUCAAGCAAUCUCCUCAGCAUCAAUUCUUUCUUGUUGUCCUUGGCAUCUGUGUUCAUCUUCAAGUUGCCCUGCAGCCCUGCACAAUACAAUUUUCUUUCUCAUCAAUGCUCUUAGAUGCGCAGUUCUCGUCUUUUUUCUGAUGCGCCUUGCCGGCAUCCUAAUCUCAAUAUUCCUUGCGCAGCACAGAAGCUUUCAGUAGCUUUCACAGAAUAUAUGCUGCCUGAGCGUGCAAAUAAACUAUCGUAGCGACGACUAUCUUGCGCUUAGUGAUAGUUACUGUUCAGGGAUGCUUUCUUGAUCAACUAGUCUGGUCUAGUGGUUAUGUGAUGCUCUUGUAGUUCAUGGGCACUGGGGGUUUGGGGAAGCACCUGAAGGAUUCAUUCCUGAUAUGGUAUCUAAUGCCAAAUUUGCACUCUAUAUGUUUUACCUUGUUUAUGACUGCGGGUGUAGUAAUGUUCUCUGAUGCCAUGUGGUAGUAGCUAGAUUUGUUUGAACGUAAUCUAAGGUUAUAUAAGAUUACACUGAGGCAAUGAGGGGGGCAUCUUUGAUAUUUCUUCCUUGGGAGUAUCGUUGGAGCAUAUGGAAUUUCUACUCCUGGUCAGUGCUUUUGGGCUUCCUCACUUUUUCAUAUUCCAAUGAUCAGAUUAGCAUUAGUCGUUGUCAUGAGAAAUAUUCCUCUUAGAAUGUGAGCAGUUGUGCCACAUUUCGCUUCCUGGUUUAUCGCAGGAUUGGAGGUGCACUCUCUCCAUGUUACCAACCACCUGCUGAAAACUUCGUUUGUGCUAUUUCGCCACAUUGCAAAUGUGCAAAUCACUUGGUACGGGUGGCAGAAAUUUCAUCAGUCAACAGUCGUAAUUAGAUCGAACCUUGUGUCAUAUGCUUAGUCCUUCUGCCUCAUUUGUUUCACUGUACUUGUAUUAACAGCAUAGCUUGUGGCCUAUGGACAACUUUUUGCAGCCGUUUUCAUCAAUUGAACUGAAGAAUGGACUCAAGCCAUCCAGGAUUCCAGUCCCAGAUGAUGCUGGUGGAGCAAAGUCAAGAGGUCUCAGUAAGGAAUGCUUUCUUUGCCUUCCCAUUCCAUCUCUGAUCAAGUGACCAUUUGAUAUGAUCCACUGAGAAAACCACCACAUUCUUGUAAACUAAACAGUAUCACACUUAUGCAACUCAAAUCUUCUUCGCAGGAUGAUUUUUUUGCGCUGGUGAACCGGUUGCCGGAGAGGGGCAGCCGAAUCUUUUGCCGCCGACCUGACUGACGGUGCAAAUCCCCGGUGCGGGAUACGGUGGAAGGCGAUCGGCCGAACCCGGUCUGCUCCACGGCUCAAUUCAUUCAUUGUCAAUGCGCGCAUCUACUGAAGAAGCUGAUAAGCUGUCUGGCUGGGCUAACCGAAAGUCGUGUGCAAAUGCAAUGGCAUCGUCAGCUCGUCGCGGUCGUGGAUGGCGAGUUGGCGACGCGUUGGUGCGUGGCCGUGCGUCUGUCUUUUGCUUCGCACGAUCAUCAGUUUUGCAGUUGCCUUCAUCGUGGCUUUAUUUGACCAUGAGCUCCGGCCAUCUGAAUCCCCAGGAGCCCAUUGAUACGUGCACCUAAUUAAGAGCCACAUUUGCAUGAAGCAUUGGAGGGGGCAAAUCCUGAAGCUUUCGUUUUUGCAGUGGUAUAAAGCAGCUAAGGGCCUGUUUGGUAGAGUUCCAACUUCUAAAUUUAACUUCAGGAGUUGGGUCUGGAGUAGAGUUGUGGAGCUGCCUAAACCCAGCUCCACUUCUCUAGUUCAUUUUGUGAGAGAGUUUCAUCCAGCUCCACUCUCAUUUUAGGUGGAGCUGAAACUGUUUGGCUGGGUUCUAGCUCCAGGAGAUGUGGAGCUGGAGCUGAGGCUCUAUCUCUUGUUUUUUUUCUUCUUUUGGAAAGCUAAAUUCCCUAUUGUAAAAAUGUGAGUUUUCUAACUGCCAACAAUUAUAGUUAACUACAGUAACAUAUUUCAAAAUUGAAUGUUCUUCUAACA

Expression Capacity

HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.

HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.

NE_num:

NEP:

0.2%

LE_num:

LEP:

11.38%

ME_num:

409

MEP:

83.13%

HE_num:

HEP:

5.28%

Type:

HCR (High-Capacity ncRNA)

Tissue Specific Expression

cutoff: tau > 0.9 and Average expression in the tissue > 10

Tissue :

embryo

Tau :

0.74

Avg Expression:

4.93

Tip: OSA-LNC107281137 is not a tissue-specific expression ncRNA.

Differential Expression

cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01

Num.	Condition	log2(FoldChange)	Padj
1	Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hN	-3.52547173489303	2.12669252112143e-93
2	Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hN	-3.61042496298613	9.89258825683736e-113
3	Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN	-4.00892589446861	2.31211505054193e-127
4	Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dA	-2.14926447443459	9.37959365919473e-29
5	Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN	-3.77169473835146	1.98121328199511e-89
6	Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA	-3.8327028968992	4.07146340225852e-89
7	Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 3hN	-1.17320795867582	4.3097901503241e-22
8	Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hA	-4.19293252707495	2.49540392086602e-131
9	IR64 // panicle // Dawn--/--IR64 // panicle // Dusk	-1.07014798157505	0.0129844640696355
10	Nipponbare // root // "mock,14_days"--/--Nipponbare // root // "auxin(50CM_2,4_D),14_days"	-1.73559100239249	0.0187402233241884
11	Nipponbare // root // "mock,7_days"--/--Nipponbare // root // "auxin(50CM_2,4_D),7_days"	-2.57992786602832	1.10284701421811e-07
12	Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 3hA	-1.46053171721513	1.04755233813308e-32
13	Vialone_Nano // root // control--/--Vialone_Nano // root // 100 mM NaCl	1.29618658557177	2.39357804562528e-07
14	Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA	-4.74382145690482	2.4101414384269e-134
15	Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN	-3.84155537819181	6.37020792785782e-91
16	Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hA	-4.07300969600051	1.01051938723012e-96
17	Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA	-4.95620931821092	1.16603857082681e-178