OSA-LNC107281133


Function Link


Basic Info

Chr:

Chr5

Start:

17363458

End:

17367861

Strand:

+

Ref_name:

LOC107281133

Sequence
(XR_003242370.1):

UUAUAGCGGUUGCUGCUCCAUUGCCAGGUUGACCGAUUUCCAAUAUCUGUGUAUGAACACAUGAUACACGCUGCACUGACAACUUCAGAUAAUUAGAUUUCGUGUAAAAUGAUGUUCCAAAAGGAGAACAUGAAUGGCCAAGAUUUCACAUUAUUUGUGGUUCAGAAAGGAAGAGAAAAGAAAAGUGGAAAGGAGUUAGAUUUGAACAAUACUCACUGGCUUGCUGGGAAGAUAAUAAUCUGUAACUUGAAGCAACUCUUCAGCCAUCCAUGUGAAUGAUGACAGCCUCCUUAGAGAUUCUCGUGAACCCUCUGACAAGCCCAUCAACUUCUGCUUCCCUGCAGAGGUGUAAGUGUAGAGAGACAUGCAUGCUAGAAGUCUUUCAUCAAGCUCAAACCCUGGGUGCAAGUGUCUGGCUAUGUCAUGUAACAAGAUCUCGCAAGCAGAAUAUCUCAUGUUAUUUUCACCGAGAGCAGCCAGCUCGCUUCCAAGCCAUGCAGCACAUACAAGGCAAUCAUGCGAGGUUCCCUUCGCCUUGCUUUGUAUUCCUUUGGCCAAAGCACGGAGAACUGGUACUCCUGUUCUGAUAAUUGUCCGUGCAGAUUUACUGCUCCAUGGACCUAUUUCUGUGUCCUGCAUCAUAUUUUACUCUGGAGUGUUAACUACGGUUAAGAUAAUUAUCUUGUCCAAAUUAGAUAGUGUUUUCAUACUUCACCUGCAGGCAAGGAUCAACCCAGUCGAUAUUUCUGAUCAUAUUUCUGUGAGAUGUUGAUGUGAGUCCUGCUUUCUUUGCGAGCCAUGCAGCAGUAUAUGAUUCCCCUGACCAGGAAUAAGUUCCUCCUAGAUUACAAAGGAAAGAUGCUGCUAAUGCCUGAACGGUGCAGUUUUCUUGGGAUGAUAGGGAAUCCAACAGGACUUCCAUUGCUUCAUCCCUGAAUACACUUUUACCAUCUGGUUUGUCCUACAGGAGCAGAUCAUUUUUUAGAUAAUGUGAGAUCAUUCCUUUAUCUAAAAUGAUAAUGUGAGAUCACUGCAAUGCUGUGUUUGUUGAACUGUUGCUAGUAUGUAUUCAUAGGAAUGGUUAAUAAUCAGUGCUUUCAUUUUAUUCGAGGUGAUAUUUAAAGUUGUCCUAAUGAGCUGCAGACAAUCUGGUUGUAUUUGCAGGGCUCUAAAUGAAAAUUCUUCAGAGGAGUACCAGGGACAGUAGACAUACCAGCAUAUCCAAUUGGAGAAGAAGAUUAGCUGCUAAAACCCUGUGUUCAGGUUCAGUUUGAUGGAGGCAGGCCAUCAAUGUAUGCAUAAUGGCAAUGCCUCCUAGCUUCUUUAUUUCUUGCAGCAGGGAGUUCGCUGCAGACCUGAAGGUUCACACAAUUCAACAAGCUAUUCGGAAUUAACAAAAUGGACCUUUUCAAGUUAUGGAAUGUACCGAGGAAUUUGAAGAAUCUCAUGGAAGUAUUCAAGAGCGGCACACUUGGCACGGUGUUCUUUUCGUCUUACAAGGUGAAGGAACGGUUCCACUGGAGUAGCCUGUGACAAGAACUUCUUGCAGUUUCCAUUAAGCCGUACACACCUGACGAGAAUAGCUGCCAGGGCCACACCUUCUUCCAAGUUGUUAUUCUUUGCAACAUCAACAAGCUUAGAUAGAAUAUGAGGAGAGCUGAUGGCACCCAAGUGGACGUUGUUUGUUACAUAGUCGAAUGCUGUCACCAAGAUCUCAAUGAGUGCUAUUGAUGCUGAUGUCGGGGUCAAUGGAAGCACCGCAGGCCACUUUUUGGUGUCUGAAUUACAAGCAACAUGUAGAAGUGAAGAUGUCGAAAUGCUGUCAAGAAGUUGGUCGAGGAUGUCUUGCCGUGCUGAUGAUUUGUAUCUCACCUCAGAAGAACUAUUCAGCAAGUGCCAUAUGGUUGUAACUUCCGAACCUGCAUCCAGCAUUUCAUGUAGGCACCUGCUGUCAGAGCUCCCCUUGGUAUCUUCUUGAAGGUCUGGAUCCUCACAGUUGAGAAAAUCCUUCAGCUCAGCGAAGCUAUCAUGAUCGCCACAGUUGGAGUCGAAGGCUCUGCACUUUUCUUCUUGAUCAAUUGAGUGGAUUGUCCCAUCCUGUGCAAAUGACAAAUUCACUUGAGCUCCCAAAUGCAGGCAUGCAGCUGUGGGUCAGGAUGGUUUAGUGUGCAUGCUUGUCACAAGCUGCUAGUGGAGAAUCUUUGUCCCCAGCUUUGCUUCAAGAAUUGGUCAGGGAUUUGGGGAUUGCAUUUGGCAAAAAAGGUGUUUCAGUUCCUUUUUUGAAUCCCUUUUGGAAAAGAUAAGAGUGCUGAUCUCCCUCUUUUUGCCACAUCACAGAGAAAAAAUGGUAGAAAGUGCAGAUUUGUGCCCAUGACCUGCAUAAAUGUGCUCCGGUGGGUUCUACAGGGAAAGAAAGCUCAAGGCAAAGGGAAUGUGAGAGAAGCUCAGAGCAUCCUUUUCACAAAUCACAAGGUGGUGUCCUACAUCAAAAUCACUCAAAUUGCAAGGUAUUCAUCUUGUAUUUUGCAAGAAUUUAAUGUUGAUUUGUUCCAAUGGCUUGCAAUCCCGG

Sequence
(XR_003242371.1):

GAACAAUACUCACUGGCUUGCUGGGAAGAUAAUAAUCUGUAACUUGAAGCAACUCUUCAGCCAUCCAUGUGAAUGAUGACAGCCUCCUUAGAGAUUCUCGUGAACCCUCUGACAAGCCCAUCAACUUCUGCUUCCCUGCAGAGGUGUAAGUGUAGAGAGACAUGCAUGCUAGAAGUCUUUCAUCAAGCUCAAACCCUGGGUGCAAGUGUCUGGCUAUGUCAUGUAACAAGAUCUCGCAAGCAGAAUAUCUCAUGUUAUUUUCACCGAGAGCAGCCAGCUCGCUUCCAAGCCAUGCAGCACAUACAAGGCAAUCAUGCGAGGUUCCCUUCGCCUUGCUUUGUAUUCCUUUGGCCAAAGCACGGAGAACUGGUACUCCUGUUCUGAUAAUUGUCCGUGCAGAUUUACUGCUCCAUGGACCUAUUUCUGUGUCCUGCAUCAUAUUUUACUCUGGAGUGUUAACUACGGUUAAGAUAAUUAUCUUGUCCAAAUUAGAUAGUGUUUUCAUACUUCACCUGCAGGCAAGGAUCAACCCAGUCGAUAUUUCUGAUCAUAUUUCUGUGAGAUGUUGAUGUGAGUCCUGCUUUCUUUGCGAGCCAUGCAGCAGUAUAUGAUUCCCCUGACCAGGAAUAAGUUCCUCCUAGAUUACAAAGGAAAGAUGCUGCUAAUGCCUGAACGGUGCAGUUUUCUUGGGAUGAUAGGGAAUCCAACAGGACUUCCAUUGCUUCAUCCCUGAAUACACUUUUACCAUCUGGUUUGUCCUACAGGAGCAGAUCAUUUUUUAGAUAAUGUGAGAUCAUUCCUUUAUCUAAAAUGAUAAUGUGAGAUCACUGCAAUGCUGUGUUUGUUGAACUGUUGCUAGGCUCUAAAUGAAAAUUCUUCAGAGGAGUACCAGGGACAGUAGACAUACCAGCAUAUCCAAUUGGAGAAGAAGAUUAGCUGCUAAAACCCUGUGUUCAGGUUCAGUUUGAUGGAGGCAGGCCAUCAAUGUAUGCAUAAUGGCAAUGCCUCCUAGCUUCUUUAUUUCUUGCAGCAGGGAGUUCGCUGCAGACCUGAAGGUUCACACAAUUCAACAAGCUAUUCGGAAUUAACAAAAUGGACCUUUUCAAGUUAUGGAAUGUACCGAGGAAUUUGAAGAAUCUCAUGGAAGUAUUCAAGAGCGGCACACUUGGCACGGUGUUCUUUUCGUCUUACAAGGUGAAGGAACGGUUCCACUGGAGUAGCCUGUGACAAGAACUUCUUGCAGUUUCCAUUAAGCCGUACACACCUGACGAGAAUAGCUGCCAGGGCCACACCUUCUUCCAAGUUGUUAUUCUUUGCAACAUCAACAAGCUUAGAUAGAAUAUGAGGAGAGCUGAUGGCACCCAAGUGGACGUUGUUUGUUACAUAGUCGAAUGCUGUCACCAAGAUCUCAAUGAGUGCUAUUGAUGCUGAUGUCGGGGUCAAUGGAAGCACCGCAGGCCACUUUUUGGUGUCUGAAUUACAAGCAACAUGUAGAAGUGAAGAUGUCGAAAUGCUGUCAAGAAGUUGGUCGAGGAUGUCUUGCCGUGCUGAUGAUUUGUAUCUCACCUCAGAAGAACUAUUCAGCAAGUGCCAUAUGGUUGUAACUUCCGAACCUGCAUCCAGCAUUUCAUGUAGGCACCUGCUGUCAGAGCUCCCCUUGGUAUCUUCUUGAAGGUCUGGAUCCUCACAGUUGAGAAAAUCCUUCAGCUCAGCGAAGCUAUCAUGAUCGCCACAGUUGGAGUCGAAGGCUCUGCACUUUUCUUCUUGAUCAAUUGAGUGGAUUGUCCCAUCCUGUGCAAAUGACAAAUUCACUUGAGCUCCCAAAUGCAGGCAUGCAGCUGUGGGUCAGGAUGGUUUAGUGUGCAUGCUUGUCACAAGCUGCUAGUGGAGAAUCUUUGUCCCCAGCUUUGCUUCAAGAAUUGGUCAGGGAUUUGGGGAUUGCAUUUGGCAAAAAAGGUGUUUCAGUUCCUUUUUUGAAUCCCUUUUGGAAAAGAUAAGAGUGCUGAUCUCCCUCUUUUUGCCACAUCACAGAGAAAAAAUGGUAGAAAGUGCAGAUUUGUGCCCAUGACCUGCAUAAAUGUGCUCCGGUGGGUUCUACAGGGAAAGAAAGCUCAAGGCAAAGGGAAUGUGAGAGAAGCUCAGAGCAUCCUUUUCACAAAUCACAAGGUGGUGUCCUACAUCAAAAUCACUCAAAUUGCAAGGUAUUCAUCUUGUAUUUUGCAAGAAUUUAAUGUUGAUUUGUUCCAAUGGCUUGCAAUCCCGG

Sequence
(XR_003242372.1):

GAACAAUACUCACUGGCUUGCUGGGAAGAUAAUAAUCUGUAACUUGAAGCAACUCUUCAGCCAUCCAUGUGAAUGAUGACAGCCUCCUUAGAGAUUCUCGUGAACCCUCUGACAAGCCCAUCAACUUCUGCUUCCCUGCAGAGGUGUAAGUGUAGAGAGACAUGCAUGCUAGAAGUCUUUCAUCAAGCUCAAACCCUGGGUGCAAGUGUCUGGCUAUGUCAUGUAACAAGAUCUCGCAAGCAGAAUAUCUCAUGUUAUUUUCACCGAGAGCAGCCAGCUCGCUUCCAAGCCAUGCAGCACAUACAAGGCAAUCAUGCGAGGUUCCCUUCGCCUUGCUUUGUAUUCCUUUGGCCAAAGCACGGAGAACUGGUACUCCUGUUCUGAUAAUUGUCCGUGCAGAUUUACUGCUCCAUGGACCUAUUUCUGUGUCCUGCAUCAUAUUUUACUCUGGAGUGUUAACUACGGUUAAGAUAAUUAUCUUGUCCAAAUUAGAUAGUGUUUUCAUACUUCACCUGCAGGCAAGGAUCAACCCAGUCGAUAUUUCUGAUCAUAUUUCUGUGAGAUGUUGAUGUGAGUCCUGCUUUCUUUGCGAGCCAUGCAGCAGUAUAUGAUUCCCCUGACCAGGAAUAAGUUCCUCCUAGAUUACAAAGGAAAGAUGCUGCUAAUGCCUGAACGGUGCAGUUUUCUUGGGAUGAUAGGGAAUCCAACAGGACUUCCAUUGCUUCAUCCCUGAAUACACUUUUACCAUCUGGUUUGUCCUACAGGAGCAGAUCAUUUUUUAGAUAAUGUGAGAUCAUUCCUUUAUCUAAAAUGAUAAUGGCUCUAAAUGAAAAUUCUUCAGAGGAGUACCAGGGACAGUAGACAUACCAGCAUAUCCAAUUGGAGAAGAAGAUUAGCUGCUAAAACCCUGUGUUCAGGUUCAGUUUGAUGGAGGCAGGCCAUCAAUGUAUGCAUAAUGGCAAUGCCUCCUAGCUUCUUUAUUUCUUGCAGCAGGGAGUUCGCUGCAGACCUGAAGGUUCACACAAUUCAACAAGCUAUUCGGAAUUAACAAAAUGGACCUUUUCAAGUUAUGGAAUGUACCGAGGAAUUUGAAGAAUCUCAUGGAAGUAUUCAAGAGCGGCACACUUGGCACGGUGUUCUUUUCGUCUUACAAGGUGAAGGAACGGUUCCACUGGAGUAGCCUGUGACAAGAACUUCUUGCAGUUUCCAUUAAGCCGUACACACCUGACGAGAAUAGCUGCCAGGGCCACACCUUCUUCCAAGUUGUUAUUCUUUGCAACAUCAACAAGCUUAGAUAGAAUAUGAGGAGAGCUGAUGGCACCCAAGUGGACGUUGUUUGUUACAUAGUCGAAUGCUGUCACCAAGAUCUCAAUGAGUGCUAUUGAUGCUGAUGUCGGGGUCAAUGGAAGCACCGCAGGCCACUUUUUGGUGUCUGAAUUACAAGCAACAUGUAGAAGUGAAGAUGUCGAAAUGCUGUCAAGAAGUUGGUCGAGGAUGUCUUGCCGUGCUGAUGAUUUGUAUCUCACCUCAGAAGAACUAUUCAGCAAGUGCCAUAUGGUUGUAACUUCCGAACCUGCAUCCAGCAUUUCAUGUAGGCACCUGCUGUCAGAGCUCCCCUUGGUAUCUUCUUGAAGGUCUGGAUCCUCACAGUUGAGAAAAUCCUUCAGCUCAGCGAAGCUAUCAUGAUCGCCACAGUUGGAGUCGAAGGCUCUGCACUUUUCUUCUUGAUCAAUUGAGUGGAUUGUCCCAUCCUGUGCAAAUGACAAAUUCACUUGAGCUCCCAAAUGCAGGCAUGCAGCUGUGGGUCAGGAUGGUUUAGUGUGCAUGCUUGUCACAAGCUGCUAGUGGAGAAUCUUUGUCCCCAGCUUUGCUUCAAGAAUUGGUCAGGGAUUUGGGGAUUGCAUUUGGCAAAAAAGGUGUUUCAGUUCCUUUUUUGAAUCCCUUUUGGAAAAGAUAAGAGUGCUGAUCUCCCUCUUUUUGCCACAUCACAGAGAAAAAAUGGUAGAAAGUGCAGAUUUGUGCCCAUGACCUGCAUAAAUGUGCUCCGGUGGGUUCUACAGGGAAAGAAAGCUCAAGGCAAAGGGAAUGUGAGAGAAGCUCAGAGCAUCCUUUUCACAAAUCACAAGGUGGUGUCCUACAUCAAAAUCACUCAAAUUGCAAGGUAUUCAUCUUGUAUUUUGCAAGAAUUUAAUGUUGAUUUGUUCCAAUGGCUUGCAAUCCCGG

Sequence
(XR_003242373.1):

GAACAAUACUCACUGGCUUGCUGGGAAGAUAAUAAUCUGUAACUUGAAGCAACUCUUCAGCCAUCCAUGUGAAUGAUGACAGCCUCCUUAGAGAUUCUCGUGAACCCUCUGACAAGCCCAUCAACUUCUGCUUCCCUGCAGAGGUGUAAGUGUAGAGAGACAUGCAUGCUAGAAGUCUUUCAUCAAGCUCAAACCCUGGGUGCAAGUGUCUGGCUAUGUCAUGUAACAAGAUCUCGCAAGCAGAAUAUCUCAUGUUAUUUUCACCGAGAGCAGCCAGCUCGCUUCCAAGCCAUGCAGCACAUACAAGGCAAUCAUGCGAGGUUCCCUUCGCCUUGCUUUGUAUUCCUUUGGCCAAAGCACGGAGAACUGGUACUCCUGUUCUGAUAAUUGUCCGUGCAGAUUUACUGCUCCAUGGACCUAUUUCUGUGUCCUGCAUCAUAUUUUACUCUGGAGUGUUAACUACGGUUAAGAUAAUUAUCUUGUCCAAAUUAGAUAGUGUUUUCAUACUUCACCUGCAGGCAAGGAUCAACCCAGUCGAUAUUUCUGAUCAUAUUUCUGUGAGAUGUUGAUGUGAGUCCUGCUUUCUUUGCGAGCCAUGCAGCAGUAUAUGAUUCCCCUGACCAGGAAUAAGUUCCUCCUAGAUUACAAAGGAAAGAUGCUGCUAAUGCCUGAACGGUGCAGUUUUCUUGGGAUGAUAGGGAAUCCAACAGGACUUCCAUUGCUUCAUCCCUGAAUACACUUUUACCAUCUGGUUUGUCCUACAGGAGCAGAUCAUUUUUUAGAUAAUGGCUCUAAAUGAAAAUUCUUCAGAGGAGUACCAGGGACAGUAGACAUACCAGCAUAUCCAAUUGGAGAAGAAGAUUAGCUGCUAAAACCCUGUGUUCAGGUUCAGUUUGAUGGAGGCAGGCCAUCAAUGUAUGCAUAAUGGCAAUGCCUCCUAGCUUCUUUAUUUCUUGCAGCAGGGAGUUCGCUGCAGACCUGAAGGUUCACACAAUUCAACAAGCUAUUCGGAAUUAACAAAAUGGACCUUUUCAAGUUAUGGAAUGUACCGAGGAAUUUGAAGAAUCUCAUGGAAGUAUUCAAGAGCGGCACACUUGGCACGGUGUUCUUUUCGUCUUACAAGGUGAAGGAACGGUUCCACUGGAGUAGCCUGUGACAAGAACUUCUUGCAGUUUCCAUUAAGCCGUACACACCUGACGAGAAUAGCUGCCAGGGCCACACCUUCUUCCAAGUUGUUAUUCUUUGCAACAUCAACAAGCUUAGAUAGAAUAUGAGGAGAGCUGAUGGCACCCAAGUGGACGUUGUUUGUUACAUAGUCGAAUGCUGUCACCAAGAUCUCAAUGAGUGCUAUUGAUGCUGAUGUCGGGGUCAAUGGAAGCACCGCAGGCCACUUUUUGGUGUCUGAAUUACAAGCAACAUGUAGAAGUGAAGAUGUCGAAAUGCUGUCAAGAAGUUGGUCGAGGAUGUCUUGCCGUGCUGAUGAUUUGUAUCUCACCUCAGAAGAACUAUUCAGCAAGUGCCAUAUGGUUGUAACUUCCGAACCUGCAUCCAGCAUUUCAUGUAGGCACCUGCUGUCAGAGCUCCCCUUGGUAUCUUCUUGAAGGUCUGGAUCCUCACAGUUGAGAAAAUCCUUCAGCUCAGCGAAGCUAUCAUGAUCGCCACAGUUGGAGUCGAAGGCUCUGCACUUUUCUUCUUGAUCAAUUGAGUGGAUUGUCCCAUCCUGUGCAAAUGACAAAUUCACUUGAGCUCCCAAAUGCAGGCAUGCAGCUGUGGGUCAGGAUGGUUUAGUGUGCAUGCUUGUCACAAGCUGCUAGUGGAGAAUCUUUGUCCCCAGCUUUGCUUCAAGAAUUGGUCAGGGAUUUGGGGAUUGCAUUUGGCAAAAAAGGUGUUUCAGUUCCUUUUUUGAAUCCCUUUUGGAAAAGAUAAGAGUGCUGAUCUCCCUCUUUUUGCCACAUCACAGAGAAAAAAUGGUAGAAAGUGCAGAUUUGUGCCCAUGACCUGCAUAAAUGUGCUCCGGUGGGUUCUACAGGGAAAGAAAGCUCAAGGCAAAGGGAAUGUGAGAGAAGCUCAGAGCAUCCUUUUCACAAAUCACAAGGUGGUGUCCUACAUCAAAAUCACUCAAAUUGCAAGGUAUUCAUCUUGUAUUUUGCAAGAAUUUAAUGUUGAUUUGUUCCAAUGGCUUGCAAUCCCGG


Expression Capacity

HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.

HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.


NE_num:

1

NEP:

0.2%

LE_num:

155

LEP:

31.5%

ME_num:

324

MEP:

65.85%

HE_num:

12

HEP:

2.44%

Type:

HCR (High-Capacity ncRNA)


Tissue Specific Expression

cutoff: tau > 0.9 and Average expression in the tissue > 10


Tissue :

callus

Tau :

0.81

Avg Expression:

5.80

Tip: OSA-LNC107281133 is not a tissue-specific expression ncRNA.

Differential Expression

cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01


Num. Condition log2(FoldChange) Padj
1Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hN2.395455570036514.29068281369124e-07
2Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hN2.039372739963924.49508624180624e-05
3Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN1.231644685048130.0492197327701808
4Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA1.29906351575560.0344553577182587
5Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hA2.023651952636019.49715618803813e-06
6Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN2.04196264028934.16696641472237e-06
7Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_B8_122.169287046724730.0363836082639364
8Nipponbare // panicle // AM--/--Nipponbare // panicle // PM5.048621735265943.21544731006596e-05
9Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hA2.190943573653775.97487323919729e-06
10Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA2.777212731074148.5379340449822e-13