Chr:
Chr5
Start:
17363458
End:
17367861
Strand:
+
Ref_name:
LOC107281133
Sequence
(XR_003242370.1):
UUAUAGCGGUUGCUGCUCCAUUGCCAGGUUGACCGAUUUCCAAUAUCUGUGUAUGAACACAUGAUACACGCUGCACUGACAACUUCAGAUAAUUAGAUUUCGUGUAAAAUGAUGUUCCAAAAGGAGAACAUGAAUGGCCAAGAUUUCACAUUAUUUGUGGUUCAGAAAGGAAGAGAAAAGAAAAGUGGAAAGGAGUUAGAUUUGAACAAUACUCACUGGCUUGCUGGGAAGAUAAUAAUCUGUAACUUGAAGCAACUCUUCAGCCAUCCAUGUGAAUGAUGACAGCCUCCUUAGAGAUUCUCGUGAACCCUCUGACAAGCCCAUCAACUUCUGCUUCCCUGCAGAGGUGUAAGUGUAGAGAGACAUGCAUGCUAGAAGUCUUUCAUCAAGCUCAAACCCUGGGUGCAAGUGUCUGGCUAUGUCAUGUAACAAGAUCUCGCAAGCAGAAUAUCUCAUGUUAUUUUCACCGAGAGCAGCCAGCUCGCUUCCAAGCCAUGCAGCACAUACAAGGCAAUCAUGCGAGGUUCCCUUCGCCUUGCUUUGUAUUCCUUUGGCCAAAGCACGGAGAACUGGUACUCCUGUUCUGAUAAUUGUCCGUGCAGAUUUACUGCUCCAUGGACCUAUUUCUGUGUCCUGCAUCAUAUUUUACUCUGGAGUGUUAACUACGGUUAAGAUAAUUAUCUUGUCCAAAUUAGAUAGUGUUUUCAUACUUCACCUGCAGGCAAGGAUCAACCCAGUCGAUAUUUCUGAUCAUAUUUCUGUGAGAUGUUGAUGUGAGUCCUGCUUUCUUUGCGAGCCAUGCAGCAGUAUAUGAUUCCCCUGACCAGGAAUAAGUUCCUCCUAGAUUACAAAGGAAAGAUGCUGCUAAUGCCUGAACGGUGCAGUUUUCUUGGGAUGAUAGGGAAUCCAACAGGACUUCCAUUGCUUCAUCCCUGAAUACACUUUUACCAUCUGGUUUGUCCUACAGGAGCAGAUCAUUUUUUAGAUAAUGUGAGAUCAUUCCUUUAUCUAAAAUGAUAAUGUGAGAUCACUGCAAUGCUGUGUUUGUUGAACUGUUGCUAGUAUGUAUUCAUAGGAAUGGUUAAUAAUCAGUGCUUUCAUUUUAUUCGAGGUGAUAUUUAAAGUUGUCCUAAUGAGCUGCAGACAAUCUGGUUGUAUUUGCAGGGCUCUAAAUGAAAAUUCUUCAGAGGAGUACCAGGGACAGUAGACAUACCAGCAUAUCCAAUUGGAGAAGAAGAUUAGCUGCUAAAACCCUGUGUUCAGGUUCAGUUUGAUGGAGGCAGGCCAUCAAUGUAUGCAUAAUGGCAAUGCCUCCUAGCUUCUUUAUUUCUUGCAGCAGGGAGUUCGCUGCAGACCUGAAGGUUCACACAAUUCAACAAGCUAUUCGGAAUUAACAAAAUGGACCUUUUCAAGUUAUGGAAUGUACCGAGGAAUUUGAAGAAUCUCAUGGAAGUAUUCAAGAGCGGCACACUUGGCACGGUGUUCUUUUCGUCUUACAAGGUGAAGGAACGGUUCCACUGGAGUAGCCUGUGACAAGAACUUCUUGCAGUUUCCAUUAAGCCGUACACACCUGACGAGAAUAGCUGCCAGGGCCACACCUUCUUCCAAGUUGUUAUUCUUUGCAACAUCAACAAGCUUAGAUAGAAUAUGAGGAGAGCUGAUGGCACCCAAGUGGACGUUGUUUGUUACAUAGUCGAAUGCUGUCACCAAGAUCUCAAUGAGUGCUAUUGAUGCUGAUGUCGGGGUCAAUGGAAGCACCGCAGGCCACUUUUUGGUGUCUGAAUUACAAGCAACAUGUAGAAGUGAAGAUGUCGAAAUGCUGUCAAGAAGUUGGUCGAGGAUGUCUUGCCGUGCUGAUGAUUUGUAUCUCACCUCAGAAGAACUAUUCAGCAAGUGCCAUAUGGUUGUAACUUCCGAACCUGCAUCCAGCAUUUCAUGUAGGCACCUGCUGUCAGAGCUCCCCUUGGUAUCUUCUUGAAGGUCUGGAUCCUCACAGUUGAGAAAAUCCUUCAGCUCAGCGAAGCUAUCAUGAUCGCCACAGUUGGAGUCGAAGGCUCUGCACUUUUCUUCUUGAUCAAUUGAGUGGAUUGUCCCAUCCUGUGCAAAUGACAAAUUCACUUGAGCUCCCAAAUGCAGGCAUGCAGCUGUGGGUCAGGAUGGUUUAGUGUGCAUGCUUGUCACAAGCUGCUAGUGGAGAAUCUUUGUCCCCAGCUUUGCUUCAAGAAUUGGUCAGGGAUUUGGGGAUUGCAUUUGGCAAAAAAGGUGUUUCAGUUCCUUUUUUGAAUCCCUUUUGGAAAAGAUAAGAGUGCUGAUCUCCCUCUUUUUGCCACAUCACAGAGAAAAAAUGGUAGAAAGUGCAGAUUUGUGCCCAUGACCUGCAUAAAUGUGCUCCGGUGGGUUCUACAGGGAAAGAAAGCUCAAGGCAAAGGGAAUGUGAGAGAAGCUCAGAGCAUCCUUUUCACAAAUCACAAGGUGGUGUCCUACAUCAAAAUCACUCAAAUUGCAAGGUAUUCAUCUUGUAUUUUGCAAGAAUUUAAUGUUGAUUUGUUCCAAUGGCUUGCAAUCCCGG
Sequence
(XR_003242371.1):
GAACAAUACUCACUGGCUUGCUGGGAAGAUAAUAAUCUGUAACUUGAAGCAACUCUUCAGCCAUCCAUGUGAAUGAUGACAGCCUCCUUAGAGAUUCUCGUGAACCCUCUGACAAGCCCAUCAACUUCUGCUUCCCUGCAGAGGUGUAAGUGUAGAGAGACAUGCAUGCUAGAAGUCUUUCAUCAAGCUCAAACCCUGGGUGCAAGUGUCUGGCUAUGUCAUGUAACAAGAUCUCGCAAGCAGAAUAUCUCAUGUUAUUUUCACCGAGAGCAGCCAGCUCGCUUCCAAGCCAUGCAGCACAUACAAGGCAAUCAUGCGAGGUUCCCUUCGCCUUGCUUUGUAUUCCUUUGGCCAAAGCACGGAGAACUGGUACUCCUGUUCUGAUAAUUGUCCGUGCAGAUUUACUGCUCCAUGGACCUAUUUCUGUGUCCUGCAUCAUAUUUUACUCUGGAGUGUUAACUACGGUUAAGAUAAUUAUCUUGUCCAAAUUAGAUAGUGUUUUCAUACUUCACCUGCAGGCAAGGAUCAACCCAGUCGAUAUUUCUGAUCAUAUUUCUGUGAGAUGUUGAUGUGAGUCCUGCUUUCUUUGCGAGCCAUGCAGCAGUAUAUGAUUCCCCUGACCAGGAAUAAGUUCCUCCUAGAUUACAAAGGAAAGAUGCUGCUAAUGCCUGAACGGUGCAGUUUUCUUGGGAUGAUAGGGAAUCCAACAGGACUUCCAUUGCUUCAUCCCUGAAUACACUUUUACCAUCUGGUUUGUCCUACAGGAGCAGAUCAUUUUUUAGAUAAUGUGAGAUCAUUCCUUUAUCUAAAAUGAUAAUGUGAGAUCACUGCAAUGCUGUGUUUGUUGAACUGUUGCUAGGCUCUAAAUGAAAAUUCUUCAGAGGAGUACCAGGGACAGUAGACAUACCAGCAUAUCCAAUUGGAGAAGAAGAUUAGCUGCUAAAACCCUGUGUUCAGGUUCAGUUUGAUGGAGGCAGGCCAUCAAUGUAUGCAUAAUGGCAAUGCCUCCUAGCUUCUUUAUUUCUUGCAGCAGGGAGUUCGCUGCAGACCUGAAGGUUCACACAAUUCAACAAGCUAUUCGGAAUUAACAAAAUGGACCUUUUCAAGUUAUGGAAUGUACCGAGGAAUUUGAAGAAUCUCAUGGAAGUAUUCAAGAGCGGCACACUUGGCACGGUGUUCUUUUCGUCUUACAAGGUGAAGGAACGGUUCCACUGGAGUAGCCUGUGACAAGAACUUCUUGCAGUUUCCAUUAAGCCGUACACACCUGACGAGAAUAGCUGCCAGGGCCACACCUUCUUCCAAGUUGUUAUUCUUUGCAACAUCAACAAGCUUAGAUAGAAUAUGAGGAGAGCUGAUGGCACCCAAGUGGACGUUGUUUGUUACAUAGUCGAAUGCUGUCACCAAGAUCUCAAUGAGUGCUAUUGAUGCUGAUGUCGGGGUCAAUGGAAGCACCGCAGGCCACUUUUUGGUGUCUGAAUUACAAGCAACAUGUAGAAGUGAAGAUGUCGAAAUGCUGUCAAGAAGUUGGUCGAGGAUGUCUUGCCGUGCUGAUGAUUUGUAUCUCACCUCAGAAGAACUAUUCAGCAAGUGCCAUAUGGUUGUAACUUCCGAACCUGCAUCCAGCAUUUCAUGUAGGCACCUGCUGUCAGAGCUCCCCUUGGUAUCUUCUUGAAGGUCUGGAUCCUCACAGUUGAGAAAAUCCUUCAGCUCAGCGAAGCUAUCAUGAUCGCCACAGUUGGAGUCGAAGGCUCUGCACUUUUCUUCUUGAUCAAUUGAGUGGAUUGUCCCAUCCUGUGCAAAUGACAAAUUCACUUGAGCUCCCAAAUGCAGGCAUGCAGCUGUGGGUCAGGAUGGUUUAGUGUGCAUGCUUGUCACAAGCUGCUAGUGGAGAAUCUUUGUCCCCAGCUUUGCUUCAAGAAUUGGUCAGGGAUUUGGGGAUUGCAUUUGGCAAAAAAGGUGUUUCAGUUCCUUUUUUGAAUCCCUUUUGGAAAAGAUAAGAGUGCUGAUCUCCCUCUUUUUGCCACAUCACAGAGAAAAAAUGGUAGAAAGUGCAGAUUUGUGCCCAUGACCUGCAUAAAUGUGCUCCGGUGGGUUCUACAGGGAAAGAAAGCUCAAGGCAAAGGGAAUGUGAGAGAAGCUCAGAGCAUCCUUUUCACAAAUCACAAGGUGGUGUCCUACAUCAAAAUCACUCAAAUUGCAAGGUAUUCAUCUUGUAUUUUGCAAGAAUUUAAUGUUGAUUUGUUCCAAUGGCUUGCAAUCCCGG
Sequence
(XR_003242372.1):
GAACAAUACUCACUGGCUUGCUGGGAAGAUAAUAAUCUGUAACUUGAAGCAACUCUUCAGCCAUCCAUGUGAAUGAUGACAGCCUCCUUAGAGAUUCUCGUGAACCCUCUGACAAGCCCAUCAACUUCUGCUUCCCUGCAGAGGUGUAAGUGUAGAGAGACAUGCAUGCUAGAAGUCUUUCAUCAAGCUCAAACCCUGGGUGCAAGUGUCUGGCUAUGUCAUGUAACAAGAUCUCGCAAGCAGAAUAUCUCAUGUUAUUUUCACCGAGAGCAGCCAGCUCGCUUCCAAGCCAUGCAGCACAUACAAGGCAAUCAUGCGAGGUUCCCUUCGCCUUGCUUUGUAUUCCUUUGGCCAAAGCACGGAGAACUGGUACUCCUGUUCUGAUAAUUGUCCGUGCAGAUUUACUGCUCCAUGGACCUAUUUCUGUGUCCUGCAUCAUAUUUUACUCUGGAGUGUUAACUACGGUUAAGAUAAUUAUCUUGUCCAAAUUAGAUAGUGUUUUCAUACUUCACCUGCAGGCAAGGAUCAACCCAGUCGAUAUUUCUGAUCAUAUUUCUGUGAGAUGUUGAUGUGAGUCCUGCUUUCUUUGCGAGCCAUGCAGCAGUAUAUGAUUCCCCUGACCAGGAAUAAGUUCCUCCUAGAUUACAAAGGAAAGAUGCUGCUAAUGCCUGAACGGUGCAGUUUUCUUGGGAUGAUAGGGAAUCCAACAGGACUUCCAUUGCUUCAUCCCUGAAUACACUUUUACCAUCUGGUUUGUCCUACAGGAGCAGAUCAUUUUUUAGAUAAUGUGAGAUCAUUCCUUUAUCUAAAAUGAUAAUGGCUCUAAAUGAAAAUUCUUCAGAGGAGUACCAGGGACAGUAGACAUACCAGCAUAUCCAAUUGGAGAAGAAGAUUAGCUGCUAAAACCCUGUGUUCAGGUUCAGUUUGAUGGAGGCAGGCCAUCAAUGUAUGCAUAAUGGCAAUGCCUCCUAGCUUCUUUAUUUCUUGCAGCAGGGAGUUCGCUGCAGACCUGAAGGUUCACACAAUUCAACAAGCUAUUCGGAAUUAACAAAAUGGACCUUUUCAAGUUAUGGAAUGUACCGAGGAAUUUGAAGAAUCUCAUGGAAGUAUUCAAGAGCGGCACACUUGGCACGGUGUUCUUUUCGUCUUACAAGGUGAAGGAACGGUUCCACUGGAGUAGCCUGUGACAAGAACUUCUUGCAGUUUCCAUUAAGCCGUACACACCUGACGAGAAUAGCUGCCAGGGCCACACCUUCUUCCAAGUUGUUAUUCUUUGCAACAUCAACAAGCUUAGAUAGAAUAUGAGGAGAGCUGAUGGCACCCAAGUGGACGUUGUUUGUUACAUAGUCGAAUGCUGUCACCAAGAUCUCAAUGAGUGCUAUUGAUGCUGAUGUCGGGGUCAAUGGAAGCACCGCAGGCCACUUUUUGGUGUCUGAAUUACAAGCAACAUGUAGAAGUGAAGAUGUCGAAAUGCUGUCAAGAAGUUGGUCGAGGAUGUCUUGCCGUGCUGAUGAUUUGUAUCUCACCUCAGAAGAACUAUUCAGCAAGUGCCAUAUGGUUGUAACUUCCGAACCUGCAUCCAGCAUUUCAUGUAGGCACCUGCUGUCAGAGCUCCCCUUGGUAUCUUCUUGAAGGUCUGGAUCCUCACAGUUGAGAAAAUCCUUCAGCUCAGCGAAGCUAUCAUGAUCGCCACAGUUGGAGUCGAAGGCUCUGCACUUUUCUUCUUGAUCAAUUGAGUGGAUUGUCCCAUCCUGUGCAAAUGACAAAUUCACUUGAGCUCCCAAAUGCAGGCAUGCAGCUGUGGGUCAGGAUGGUUUAGUGUGCAUGCUUGUCACAAGCUGCUAGUGGAGAAUCUUUGUCCCCAGCUUUGCUUCAAGAAUUGGUCAGGGAUUUGGGGAUUGCAUUUGGCAAAAAAGGUGUUUCAGUUCCUUUUUUGAAUCCCUUUUGGAAAAGAUAAGAGUGCUGAUCUCCCUCUUUUUGCCACAUCACAGAGAAAAAAUGGUAGAAAGUGCAGAUUUGUGCCCAUGACCUGCAUAAAUGUGCUCCGGUGGGUUCUACAGGGAAAGAAAGCUCAAGGCAAAGGGAAUGUGAGAGAAGCUCAGAGCAUCCUUUUCACAAAUCACAAGGUGGUGUCCUACAUCAAAAUCACUCAAAUUGCAAGGUAUUCAUCUUGUAUUUUGCAAGAAUUUAAUGUUGAUUUGUUCCAAUGGCUUGCAAUCCCGG
Sequence
(XR_003242373.1):
GAACAAUACUCACUGGCUUGCUGGGAAGAUAAUAAUCUGUAACUUGAAGCAACUCUUCAGCCAUCCAUGUGAAUGAUGACAGCCUCCUUAGAGAUUCUCGUGAACCCUCUGACAAGCCCAUCAACUUCUGCUUCCCUGCAGAGGUGUAAGUGUAGAGAGACAUGCAUGCUAGAAGUCUUUCAUCAAGCUCAAACCCUGGGUGCAAGUGUCUGGCUAUGUCAUGUAACAAGAUCUCGCAAGCAGAAUAUCUCAUGUUAUUUUCACCGAGAGCAGCCAGCUCGCUUCCAAGCCAUGCAGCACAUACAAGGCAAUCAUGCGAGGUUCCCUUCGCCUUGCUUUGUAUUCCUUUGGCCAAAGCACGGAGAACUGGUACUCCUGUUCUGAUAAUUGUCCGUGCAGAUUUACUGCUCCAUGGACCUAUUUCUGUGUCCUGCAUCAUAUUUUACUCUGGAGUGUUAACUACGGUUAAGAUAAUUAUCUUGUCCAAAUUAGAUAGUGUUUUCAUACUUCACCUGCAGGCAAGGAUCAACCCAGUCGAUAUUUCUGAUCAUAUUUCUGUGAGAUGUUGAUGUGAGUCCUGCUUUCUUUGCGAGCCAUGCAGCAGUAUAUGAUUCCCCUGACCAGGAAUAAGUUCCUCCUAGAUUACAAAGGAAAGAUGCUGCUAAUGCCUGAACGGUGCAGUUUUCUUGGGAUGAUAGGGAAUCCAACAGGACUUCCAUUGCUUCAUCCCUGAAUACACUUUUACCAUCUGGUUUGUCCUACAGGAGCAGAUCAUUUUUUAGAUAAUGGCUCUAAAUGAAAAUUCUUCAGAGGAGUACCAGGGACAGUAGACAUACCAGCAUAUCCAAUUGGAGAAGAAGAUUAGCUGCUAAAACCCUGUGUUCAGGUUCAGUUUGAUGGAGGCAGGCCAUCAAUGUAUGCAUAAUGGCAAUGCCUCCUAGCUUCUUUAUUUCUUGCAGCAGGGAGUUCGCUGCAGACCUGAAGGUUCACACAAUUCAACAAGCUAUUCGGAAUUAACAAAAUGGACCUUUUCAAGUUAUGGAAUGUACCGAGGAAUUUGAAGAAUCUCAUGGAAGUAUUCAAGAGCGGCACACUUGGCACGGUGUUCUUUUCGUCUUACAAGGUGAAGGAACGGUUCCACUGGAGUAGCCUGUGACAAGAACUUCUUGCAGUUUCCAUUAAGCCGUACACACCUGACGAGAAUAGCUGCCAGGGCCACACCUUCUUCCAAGUUGUUAUUCUUUGCAACAUCAACAAGCUUAGAUAGAAUAUGAGGAGAGCUGAUGGCACCCAAGUGGACGUUGUUUGUUACAUAGUCGAAUGCUGUCACCAAGAUCUCAAUGAGUGCUAUUGAUGCUGAUGUCGGGGUCAAUGGAAGCACCGCAGGCCACUUUUUGGUGUCUGAAUUACAAGCAACAUGUAGAAGUGAAGAUGUCGAAAUGCUGUCAAGAAGUUGGUCGAGGAUGUCUUGCCGUGCUGAUGAUUUGUAUCUCACCUCAGAAGAACUAUUCAGCAAGUGCCAUAUGGUUGUAACUUCCGAACCUGCAUCCAGCAUUUCAUGUAGGCACCUGCUGUCAGAGCUCCCCUUGGUAUCUUCUUGAAGGUCUGGAUCCUCACAGUUGAGAAAAUCCUUCAGCUCAGCGAAGCUAUCAUGAUCGCCACAGUUGGAGUCGAAGGCUCUGCACUUUUCUUCUUGAUCAAUUGAGUGGAUUGUCCCAUCCUGUGCAAAUGACAAAUUCACUUGAGCUCCCAAAUGCAGGCAUGCAGCUGUGGGUCAGGAUGGUUUAGUGUGCAUGCUUGUCACAAGCUGCUAGUGGAGAAUCUUUGUCCCCAGCUUUGCUUCAAGAAUUGGUCAGGGAUUUGGGGAUUGCAUUUGGCAAAAAAGGUGUUUCAGUUCCUUUUUUGAAUCCCUUUUGGAAAAGAUAAGAGUGCUGAUCUCCCUCUUUUUGCCACAUCACAGAGAAAAAAUGGUAGAAAGUGCAGAUUUGUGCCCAUGACCUGCAUAAAUGUGCUCCGGUGGGUUCUACAGGGAAAGAAAGCUCAAGGCAAAGGGAAUGUGAGAGAAGCUCAGAGCAUCCUUUUCACAAAUCACAAGGUGGUGUCCUACAUCAAAAUCACUCAAAUUGCAAGGUAUUCAUCUUGUAUUUUGCAAGAAUUUAAUGUUGAUUUGUUCCAAUGGCUUGCAAUCCCGG
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
31.5%
ME_num:
MEP:
65.85%
HE_num:
HEP:
2.44%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
callus
Tau :
0.81
Avg Expression:
5.80
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
Num. | Condition | log2(FoldChange) | Padj |
---|---|---|---|
1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hN | 2.39545557003651 | 4.29068281369124e-07 |
2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hN | 2.03937273996392 | 4.49508624180624e-05 |
3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN | 1.23164468504813 | 0.0492197327701808 |
4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA | 1.2990635157556 | 0.0344553577182587 |
5 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hA | 2.02365195263601 | 9.49715618803813e-06 |
6 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN | 2.0419626402893 | 4.16696641472237e-06 |
7 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_B8_12 | 2.16928704672473 | 0.0363836082639364 |
8 | Nipponbare // panicle // AM--/--Nipponbare // panicle // PM | 5.04862173526594 | 3.21544731006596e-05 |
9 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hA | 2.19094357365377 | 5.97487323919729e-06 |
10 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA | 2.77721273107414 | 8.5379340449822e-13 |