Chr:
Chr5
Start:
25195445
End:
25197888
Strand:
+
Ref_name:
LOC107281115
Sequence
(XR_001546119.2):
UUCUCAAAAUCCUCCUAUAUUUUCUUCAUUUGGUGAUUUGUUUUGGAGAAGAGCAUGAACCCUAGGUUUGUCGUUUUUGUGAGACAAGGAAGAUCGACUUCAUUUAUCGGUUAGGUGAGUUCUAUAGGUUAAUUUUGAGGGGAUUUCAUUCAUCGGUACUGAACCCUAGUUGGUAGGAUGGAUUUGGUAGGUUCCAAUGUAGGGUUUGGGAAGAAUUUUUAUUCUCAUUGGCGAUGUAGUAUGUAGUGAAUCGAAUGAAUGUGAUGGUAUGAAGUUUGUGCCACAUUGUCUAGUUUGGUUUACUUGUGUAAGUUAGUCUUUUAGUACCCUUGUCGUUGUUUAAUUGAAAUAGAUGUACUAAUAGUAUUACUUACUUUGAAAGGUGGUCGGACUUUGUAGAUGGAGAGAGUUGUUCAUGUGCACUAUGGUGGAAGUGUCCUAGAGUCGAGUAAUGGUGGUAGUCAGUUCGAUGGGAUGUCGGUGAAGAUGAUUGUUUUUCAAUCUAAGCCUACCUUCGAGGAGCUUUUGUGUCGUACGAAGGAUAUUCUGGGUUGGUCGGACAAGGUGGUAUCCAUUCAAGAUAGAUAUGAUAUGGGGGGAGAGCCUAUUUCACAUAAGCAAAUGCUAGAGUUGAAUGGAGAGACCGAAUGGGAGGCAUAUGUUGAGAUAGUGAAGGAAUCACGGUUCACUAUGUGCACUUAGUUGUCGUGGAACUACGAACCUAUUUUGUUAAAUGUGCUUCUGCUUGGAAACUGGUUUGGGAUGCUUCUGCAUGGGUGUAGGGAUGUUUGAAAGUUUAAAUGCUAAUUUCUGAAUAUACCUCCUCCACUCUCUUGCGAGCUUUUCCCUCCUUGCCGUUGUUGCGUGAUGUGGAGAACGGCAACACCUGGUCGGUGCUCUGGAGAGCACCUUUCCCUUUGCGCUGGGGUGGUGGGUGGUUCAAGCUGCCCGCUCCGACGAAAUUGGCCAUGGCAGAUGGACCAAGAGGUGGAGGGAAGCCAAGGGGACGACGCGGUAGCGUUGCGACUCAGAACAACGGCGCUAGCGGCGGAGAUGAGGUGAUACGGGUGGGACGCGUCUGGAACUCUGGAUCUGAUGGGUAAAGUGAAGUGGUGUGUGUUUCUUACUUGUUGCUGAAGAAGGGAAGUCCGUUGCAGGUACCGUGACGCAUUUCGCUAACCUAGCUAACCGCAACGAGGAAUUGGAGGCCCAGCUUCAACAACUUCGCUCCAGCUUCAACAUCCUCCAAGCCUUUGCCACUCCCUUCGUCGCUGUCCUGAUUUGUAUCAUCGCCAUCGCUGCGUGGCGUUUCGCUUAAUCCGACCGGCUACAAGUUAGCCACAAGUAUACUUUUGUGUAGCAUAUGGUGCUAAUGCCAAUAUGGUAGUACUAUAAAGACAACUAGAGGUGAACGCGCGCUUCGCGCGUUGCACCAGUGGUGCCAGGAGAGGAAAAUCAUUGAUUACAUCUGUUGGUUCUGGUAGGUAACUGAAACAAAUGCUAUUUGCAAGGUCUGUGAAGGUCAAGUAUAGGCUAACGACAUGGUGUGAGAUUUAGGUUUAGUGUAGUGCAAAAAAUGAAGUUUUGUGACGUGAGCAUUUAUAUUGAAAGUUGUUAUAGAGGCUAAAAGCUAAUCACAACAUAUAUGCAGAUUGUGGACAGUCCUAAAUAGCAAAAUGUGCCACAUGUUUGAUGGCAGGAUAGACAGUACAUAGUAGUUUUAUAGUGGUAGCAUUGAAACAGUUCUGCUAGAUGAGCACAUAGGAGUAUAGGACUAUAAAACUAUAUUACACAUGGCUAAAUUCUACUAAUAUGGUUUGGAUGCCUUCACCGAAUUCACACAGGGGCCCUUUUGUUGAUGUGCAAAUGGAAGUGCAAUAUGUUUUGCUAUGAUGAAUUGCUUCCCCCGUGUA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
40.65%
ME_num:
MEP:
27.85%
HE_num:
HEP:
31.3%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
flag_leaf
Tau :
0.84
Avg Expression:
12.19
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN | -5.62056527682067 | 0.000652716978651838 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN | -3.90800927020302 | 0.0230120875264952 |
| 3 | Vialone_Nano // leaf // control--/--Vialone_Nano // leaf // 100 mM NaCl | -2.36726044475492 | 2.00103365101317e-13 |
| 4 | Nipponbare // leaf // H2O_control--/--Nipponbare // leaf // Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | -1.53300002602329 | 2.46192545716849e-05 |
| 5 | IR64 // panicle // Dawn--/--IR64 // panicle // Dawn + 14h | -2.21076275263357 | 2.43862035353871e-05 |
| 6 | IR64 // panicle // Dawn--/--IR64 // panicle // Dawn + 17.5h | -1.84911816498863 | 0.000968947339373685 |
| 7 | IR64 // panicle // Dawn--/--IR64 // panicle // Dawn + 10.5h | -1.2236585810672 | 0.0110034562247727 |
| 8 | IR64 // panicle // Dawn--/--IR64 // panicle // Dusk | -1.49149850830415 | 0.00395608981161031 |
| 9 | Nipponbare // shoot // Drought_during_3_days;_mock_inoculated--/--Nipponbare // shoot // Drought_during_3_days;Fr13_inoculated | -1.19044897176492 | 0.0125191858531084 |
| 10 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_BLS256 | -1.72545817821838 | 6.63262077498954e-12 |
| 11 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_BLS279 | -1.17331583045915 | 0.00231533809143267 |
| 12 | BR-IRGA_409 // spikelet // control condition (29C) for 7 hrs--/--BR-IRGA_409 // spikelet // high temperature treatment (38C) for 7 hrs | -1.96009203368674 | 8.60442235370658e-07 |
| 13 | Baldo // leaf // control--/--Baldo // leaf // 100 mM NaCl | -1.17849239802191 | 0.000148828084062778 |
| 14 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA | -3.02696727198123 | 0.0185202889557989 |
| 15 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_B8_12 | -2.00995594567111 | 8.34343632051223e-16 |
| 16 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_RS105 | -1.16255835058246 | 0.00214275957125314 |
| 17 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_CFBP7341 | -1.49509773986219 | 2.13582504177422e-07 |
| 18 | Nipponbare // leaf // "wild_type,control,2"--/--Nipponbare // leaf // "wild_type,drought,2" | -1.96638824533266 | 8.00828513468666e-06 |
| 19 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_CFBP7342 | -1.54851016360383 | 2.65573576324369e-06 |
| 20 | Nipponbare // leaf // control--/--Nipponbare // leaf // drought | -1.96649065493234 | 8.13398641113109e-06 |
| 21 | Nipponbare // leaf // "wild_type,control,1"--/--Nipponbare // leaf // "wild_type,drought,1" | -1.9665796735346 | 8.07911545437802e-06 |
| 22 | Nipponbare // leaf // Watered;Long_Day--/--Nipponbare // leaf // Drought;Long_Day | -1.04980231438601 | 0.00830265810753548 |
| 23 | Nipponbare // shoot // No_DIS;_mock_inoculated--/--Nipponbare // shoot // No_DIS;Fr13_inoculated | -1.61031285521791 | 0.0362857653164605 |
| 24 | Nipponbare // panicle // AM--/--Nipponbare // panicle // PM | -3.48338069078277 | 4.12378992847296e-19 |
| 25 | Nipponbare // leaf // Watered;Long_Day--/--Nipponbare // leaf // Watered;Short_Day | 1.48746151346763 | 3.94952872350008e-08 |
| 26 | Nipponbare // leaf // Watered;Short_Day--/--Nipponbare // leaf // Drought;Short_Day | -1.36302501362483 | 4.14059266358408e-06 |
| 27 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA | -1.87602479282751 | 0.0480330391974406 |