Chr:
Chr5
Start:
26274949
End:
26276378
Strand:
-
Ref_name:
LOC107281099
Sequence
(XR_001546064.2):
GAGAAGUCGUCUCCAUCAUCUUCAUCCUCCACGCCGCUAUCUAUCUUCUUUCGCAUGGUUGCAUCUGCUUCCUCUUCUUGUUCGCUCGUCUCGGGUUGAUCUGCGAUUUCAGAUCUUGUUCUUUCCGUUUGGUUUUUCCUUUGCCAGGAUCUAAAUGCAGACUGGAUUGUGGAUUGAAAAUUGCGGCUGAAGAACGUGAACAUUGAAUGCAGACUGCUACAUUCGCACUGUUUUGUAUCAGUCCGUUAAUUCUACAAUAUUUAGCUGUUUAGUAAUUAAACAAUGGUCCUGUCAUCUUUUGUAACCUGUUAAGAUUGAUAUUGAAUAAAUCAUAUUUGCGUAUUUUAACCUA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
4.07%
ME_num:
MEP:
28.05%
HE_num:
HEP:
67.68%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
root_meristematic_zone
Tau :
0.76
Avg Expression:
59.64
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | IR64 // panicle // Dawn--/--IR64 // panicle // Dawn + 3.5h | -1.20503446063438 | 0.0471291674995774 |
| 2 | IR64 // panicle // Dawn--/--IR64 // panicle // Dawn + 7h | -1.69320476932937 | 0.00557996186869414 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN | -1.2467962527871 | 1.10986664798676e-16 |
| 4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dA | -1.62683202665263 | 6.31791851964152e-11 |
| 5 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN | -1.85655173423587 | 2.74538171534129e-20 |
| 6 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA | -1.75832513308252 | 1.33219643227852e-17 |
| 7 | IR64 // panicle // Dawn--/--IR64 // panicle // Dawn + 14h | -1.1706330312786 | 0.0296131156550706 |
| 8 | Nipponbare // shoot // Drought_during_3_days;_mock_inoculated--/--Nipponbare // shoot // Drought_during_3_days;Fr13_inoculated | 1.38164913613611 | 0.00397119949714095 |
| 9 | Nipponbare // shoot // "Control,22C for 10 min, then 30C for 1h50 min"--/--Nipponbare // shoot // "Heat,42C for 10 min, then 30C for 1h50 min" | 1.49063205543464 | 0.000861392242827136 |
| 10 | IR64 // leaf // ethanol solvent (untreated control)--/--IR64 // leaf // gibberellic acid (GA) | 7.70054481252328 | 5.51864671852473e-05 |
| 11 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA | -1.47025939176625 | 1.00927406162272e-21 |
| 12 | Nipponbare // leaf // "wild_type,control,2"--/--Nipponbare // leaf // "wild_type,drought,2" | 1.73347587972002 | 0.00885189674111266 |
| 13 | Nipponbare // leaf // control--/--Nipponbare // leaf // drought | 1.73339001412347 | 0.00907417742380202 |
| 14 | Nipponbare // leaf // "wild_type,control,1"--/--Nipponbare // leaf // "wild_type,drought,1" | 1.73326349042595 | 0.00889609278982563 |
| 15 | Nipponbare // leaf // Watered;Long_Day--/--Nipponbare // leaf // Drought;Long_Day | 1.70852930756353 | 0.00353715784841098 |
| 16 | Nipponbare // shoot // No_DIS;_mock_inoculated--/--Nipponbare // shoot // No_DIS;Fr13_inoculated | 1.57510979269741 | 0.000691891999660904 |
| 17 | Nipponbare // leaf // Watered;Short_Day--/--Nipponbare // leaf // Drought;Short_Day | 1.16797333701905 | 0.00817484215738825 |