Chr:
Chr5
Start:
28900491
End:
28903425
Strand:
+
Ref_name:
LOC107281087
Sequence
(XR_001545989.2):
CACUAUACUAUUAAUAUAUAGUCCCACUUGUCAUACACACUGCAUCUUGAAGUCCGUGUUGUAGCUGGUUACAGAUCUGUAGCCCGCUGCUCUUCUUUCUUAUCUUUUAUCUCAUUAAAAUAUAUUUAUAGCUGGCUAAUAGCAUGCUAUUGUACCUGCUCUCACCCUGUCACCAUCGUCGUCCCCGUCACCGAGCGCCGCCGCCUCCGCCUCCGCCUCUACCACCCCCUCGCGCUGCCACCUUCGCCUCUGCCUCCUCUGCCUCGCGUGGCCGUCGCCGGGCGCGCCGCCUCCGGCUCACGCCGCCGCUGCCGGCCAUCGCCUCUGGCCGCCGACGUCCGGAUCCGACCUCCCAUGUGUUUGGGGGACGCGGAUCUGACCGCCGCAGCGUCGUCCUCCGCUAUCGUCGCCAUCGCCGAGCGUCGCCGCUGCAUCCUUCGCCGCACCUCCGUCAUUCACCGCCAAAGACCGCUGUGAGCGGUCGACCUCUGGUGGAGCCGGCCGUCAUUGCCGCAACCUCGUGGGCUACAGGACGGUUGUCCGUCGAUUUGAGGAGGGAGAGGCGGCAACAGCAAUAAAGAGGGGAGAGGCCUGCCGGCGGCUGUAUGGUGGAGAAGCGCCGCCGCAGCCCGCAUCCCCUCCUCUCGCCCCUCCCUCUCCGACCCGGGCGAUUCGCAAGCCGCCGCCACCGCAUGGGCUCCAGGAACCACCAUCGUCGUGUCCCCUGGUCUCCUCAAUCCUCCUGUGCGCCACUCAUGCCGGCGAGAUGAGAUCGGAUGCCAGCGAGAUGAGAUUGGCGGCAGUGGGCAACUCCAAGAAGUCGAGAUUGAGGGCUCUGGCUACCGCCUUCGAUAACAUCUGGCCUGGUGCUGCGCCUGCCUCGGCAUAUCUGGCGAUGGUGUCGACCUCAGCGAUGACAUGGAUUGCGCUCCGACAUUUGUGGCGGAUCAAGCACACAUCAAUGGAGCCCCACUUCUCCUCCCCCACCAGCAAGGGCAGAUGGAGGCGGUGUGCGCCGGUGGCUGUAGAUCAAAUGACGACCUUGACGAUGAGGCAGCCACGAUCUCGUCUUCCCUGCUCAGUUCUUAUUCUCAUUCUCCCUGCUUGCAUCAUCCUCAAGCUUUUAAACCAAUGCUUAGCUGGCUCCUACACUGAGCGGCAAUGGUGGCACCAAAGUGCUGUCCAGGUGAUCAGUUCGCCUGUGGAUUUGUUGUUGAAAACACCACCAGGCAGCACGUGGUGGCCGAUGGUCGCGCUUCCACCAACUUCUUCAGAGUGUGGAUCCAGUCUUGAUGUUGGGGAGCUACUACUUUUCCUACAGUCUUGAUGUUUUGAUUCAUUUGGAGUUUUAGUUUGCUGUGCUCUGAUUGUGUAUUUUUCUUUAGGUUUGAUCAGCAUCUUCUGCUCGGUGCCAUUCCAUUCCACAAGACCUUCUGUUGAAGGAGCUUGGAGUUUGCAGUGUCGUGAACUGAACAAAUCCUACGAGUGGCUGGUUCCCAUGUGCCUGUAAGAGGUUCCUGGAAUUGAAAGCCUGGUGUUACCAACUAGAGAUUAUCUUUGUAUACCAUAAUUUGAGGACCUUUGCCGUGCGGCUGACUUCGUUCAAAACCACCGUUGGCAGGCUGCUGGGCAAGCUAGGAUUCAGGAGCUUGGAGCUGGGAGGCUGAUAUUAUCCCUCCUGUUCUCUGCUUCUAUGGCUGGCGGAGGAUGAGAUAAAGUGGAGUUGGGGGCAAGUGAGGGCAGUGAGGGUAUGAGGCUAUGAGCUACCUCAUUAUUUUUCAGGCAUUGCCUGAUUUUCUCCAAUUGUUAACUUACAUGCCAUUCUUUAGUUUUAGAGUGUUUAUAUAGGUGUAAUUCACUCAAUAUGUAUUUAUAUUACUCCUUUCUUGGGCAAA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
0
LEP:
0.0%
ME_num:
MEP:
27.03%
HE_num:
HEP:
72.76%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
carpel
Tau :
0.63
Avg Expression:
19.83
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 3hN | -1.14495990996078 | 2.08093277929929e-11 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hA | -1.01586550427596 | 7.45870490017306e-12 |
| 3 | Nipponbare // shoot // Drought_during_3_days;_mock_inoculated--/--Nipponbare // shoot // Drought_during_3_days;Fr13_inoculated | -1.08261188414209 | 0.000632718350925851 |
| 4 | Nipponbare // panicle // AM--/--Nipponbare // panicle // PM | -1.32348421925654 | 2.02318877988035e-05 |
| 5 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hA | -1.07536242662319 | 4.94497822230043e-10 |
| 6 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA | -1.04748786844093 | 7.18366692648531e-15 |