Chr:
Chr5
Start:
18306862
End:
18308218
Strand:
-
Ref_name:
LOC107281035
Sequence
(XR_001545924.2):
AUCUUCUUCUUUUCCCCUUUCGAAGGCAUUGUCACUUUGUCAGCCUUCUGCUAGCCUUUGGACUUCAAAUCCAGCAACCAUCUGAAAAGUUAAAUGGCAAGUAAUUCAGAAACAGAAAAGCAUAUCUGCUUUGUUAAUUAGUUUGUUCUGGUGAUCGUAGUGCGCGUGUGCGUCGAUGUUAUAUAUAUAUAUAAACACAUGGAGGGGUCGAUCUCAAUAACACACACCAACACCAAGCAACCGAAACAACUUGAAGCUAUCGCUAGCUUAGCUGCAGCUCAUGCAAUAAGCUAAUUAGAAGCUAGCACAAAGUAUACGUAGUAACAGCAAUUCUCUGAUCUCGAUGGAGAACAACAAGAACAGCCAGCUGCAGCCUCCUCCAGGUUACCCGAGGUUGGAUUCGGAGCAGCAGGCAGGGAAGAAGAAGGGACGCUGCUGUGGAUCAUCUUGCCGCCGUUCAACUAAACGUGGGGAGACGAGCUUUAUUGAAGGAUGCAUUGCUGCGCUCUGUUGCUGCUGGCUCUGCGAGCUGUGCUGCGACUGAAGAAGGGAUAUAUAUAUAUAUAUAUAUAUAUAUAUAUAUAUAUGUAUCACAUAUUUGCUCCAGAUCAUUGUGAAAAUCGAGGGUUGUUAAUUAUAUACGCAUGGACGUCUGUCCUUAUACUUGUUUAGAUGAGUUUGUUCCCAAUAUAAUGUUAAUUUGGCGUAAUAUAUUAUAUAUAUUGUACUUCUCUCAUGCAGUACGUAUAUAGAGUAUAUAGUACGUCUUGAGGCAUCUAUAUAUACUUUCUUCCCUUGUUAUUAUUGAUAAUAUAUAUUUAUGUAUCGACUGUCGUACACAAAAUAAGCAUUUUCUACAUUCAUGUGAA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
54.07%
ME_num:
MEP:
31.1%
HE_num:
HEP:
14.63%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
root_differentiation_zone
Tau :
0.92
Avg Expression:
18.94
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN | 6.41540641760272 | 2.88351205740043e-06 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dA | 4.73855807010838 | 0.0121099499363623 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN | 7.35407792100399 | 1.79853193652713e-08 |
| 4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA | 7.14575898015977 | 4.74121022534595e-08 |
| 5 | Nipponbare // shoot // No_DIS;Fr13_inoculated--/--Nipponbare // shoot // Drought_during_3_days;Fr13_inoculated | 1.28953796255078 | 0.00913757097744314 |
| 6 | Nipponbare // shoot // Drought_during_3_days;_mock_inoculated--/--Nipponbare // shoot // Drought_during_3_days;Fr13_inoculated | 4.79472812962104 | 6.35467189142569e-11 |
| 7 | Nipponbare // root // "mock,1_day"--/--Nipponbare // root // "auxin(50CM_2,4_D),1_day" | -3.12591933327308 | 1.99238060673025e-05 |
| 8 | Nipponbare // root // "mock,14_days"--/--Nipponbare // root // "auxin(50CM_2,4_D),14_days" | -5.0388138076547 | 9.6730671613582e-09 |
| 9 | Nipponbare // root // "mock,7_days"--/--Nipponbare // root // "auxin(50CM_2,4_D),7_days" | -5.22483974286153 | 1.1129890298745e-07 |
| 10 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_BLS256 | -3.54831873624637 | 0.00452791812512187 |
| 11 | 9311 // leaf // control--/--9311 // leaf // salt | -3.03732647933108 | 0.00188958505118668 |
| 12 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA | 5.54060620172649 | 0.000113434676536767 |
| 13 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_B8_12 | -1.42707808664878 | 0.0447643545035027 |
| 14 | Nipponbare // leaf // "wild_type,control,2"--/--Nipponbare // leaf // "wild_type,drought,2" | 4.61830865108281 | 0.0299256738207704 |
| 15 | Nipponbare // leaf // control--/--Nipponbare // leaf // drought | 4.61821179369749 | 0.0301762283792316 |
| 16 | Nipponbare // leaf // "wild_type,control,1"--/--Nipponbare // leaf // "wild_type,drought,1" | 4.61815316867048 | 0.0299908201452912 |
| 17 | Nipponbare // shoot // No_DIS;_mock_inoculated--/--Nipponbare // shoot // No_DIS;Fr13_inoculated | 2.98353631282718 | 0.00027151009104363 |
| 18 | Nipponbare // leaf // Non-inoculated--/--Nipponbare // leaf // Inoculated with Pyricularia oryzae | -2.98468597798701 | 0.0448593231931946 |
| 19 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hA | 4.5816695991459 | 0.00825609333020878 |
| 20 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA | 6.22394166069884 | 1.85400153418014e-06 |