Chr:
Chr5
Start:
11218038
End:
11220395
Strand:
-
Ref_name:
LOC107281018
Sequence
(XR_001545895.2):
ACAGUACUCUAUCUUCAACCUCCAGACAGAGACCGAGCCGUCCCAAGCCUGUGCAGCCGUGCCGCCUCCUCCCACCAAUCCGGCCACCUCGUUGCUCCUUUUUCCAAAUUAGUUGCGGGAAUGGAAUCCUCUCAAUCUCCUAUUCCUUUUCCGCAAGAAAUACCCAAAAGUUUCUAUGGAAAUCCUUUCCAAUUUCGCGGUUCAAUCUUUCCUUACUCCGGCGAGAACCCUAGACUUUCCCGAGUUUUCCCGUCGAUUUGGGCUCGGACCCGAGCUCCCGUGCCUAUAUAAAGGACCCCUUAGUCGUCCUCUACCUAUCCCCCCAUGUCUCAUCUUCCGCCGUCGUCGGAAUCGCCCUCCCCGCGAGCUCCUUCUCUCUCCGCCGCCGGUAGCCGUUCCAGCCGCCGUGCGCCGUCGCCUCGGCCGUCGCCGAUCAGCGCCACCACCUCCCUCGGCUCCGCAAAGUACAGCUCUAUCCCGGCCGCUGGUUCUUUUGCGCCAAAUCCAACCGGAGAUUGGCCGUCAUCGUGAACCGGAGCGCCGCCGUCGCCGCCGUGCCUCCAGCCGCGCCGUUCGUCGUCGUCCGUCGUCGCCUUCGGUCGCCGUCGUCUCCAUUGGAUUCGCAGCUGCGAGGAGAAGCCCGUCCGCCAUCUGUCAUCCGCCGAAAAUCGCCAGAAAGUCGUCGCUGGCCAACUCCUUCGCUUCAUCGCUGCGUAAGUGUUGCAUCGUCGUCGUCUCCAUGUGUUACCGCUGGGUCACCGUCGUCAUCUCUCUCUCUGAUCGCUUUGGUUCGUUUGUCGUUUCCGUCGUUUUCGGAGGAUCGUGAGUGCGUCGGAAGUGUUCAAGAAGAUUAAUUGAAUUGAAGACCCUUUAUUGCAAGGAAAGUCACACAGAUCCCAAACACAAUUCCUUUGAGCAUGUUGAUCCUAUAUUUAAAUUCUCUAUUUAUUUCAACUAUGCAUUUAUUUUUGGAAUGUCACCGGGUGGUGUGAACCUAUUCCUUUGUUAUGCCCACUUUGCAUUGCUUACUCUAUUCUUUGAUACCUUGGGUGACAAUUUGACUAGUUGGACUUAUAUAUUGGUUCAGCUAGAUAUUAGAUAUAAUUGCUUAGCCAUGCUUACAAACAUUAGCACAUGAUUGGGAUAACUAAUGUUUCA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
48.17%
ME_num:
MEP:
50.81%
HE_num:
HEP:
0.81%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
shoot
Tau :
0.85
Avg Expression:
2.54
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN | 4.32283199854432 | 0.0214842645099919 |
| 2 | Nipponbare // shoot // Drought_during_3_days;_mock_inoculated--/--Nipponbare // shoot // Drought_during_3_days;Fr13_inoculated | -1.77959554249924 | 0.00590672906231779 |
| 3 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_B8_12 | -1.3106068823113 | 0.00420520871956169 |
| 4 | Nipponbare // leaf // Watered;Short_Day--/--Nipponbare // leaf // Drought;Short_Day | 1.28988392168919 | 0.0327191514361125 |