Chr:
Chr5
Start:
7158065
End:
7161061
Strand:
-
Ref_name:
LOC107280886
Sequence
(XR_001545867.2):
GCAUGCCUUAUAUUAUGGAACAUCUAAUAAAAGCGGUUGUGUCUUAUAUUAUGGAAUGGAGGGAGUAUUUUUUUUUUAAAAAAAGAGAGAUUUAGAGUAAGAGUCGUCUCUUCAAACAUUUUUGAGAAAAAAAAUAUGAGUGUAUUCGGGAUUGAACACGAGACUUAGUUGAAACUAUAUAUCUCUUCUCACUGCACUGUCAAGUGCUCUUAACUUCAAUUUCAAGCAAAGUUAUUUGUCAUCAUGAACGUAUAUAAACUACGAGAACAUAUCCGGUGAAAACGAGUUAAGUGUUCGAAACUCAUGAAAAUAAUAUCUAAAAGUUUUGUAAAUUCAUGAAAAAAUACUAGAGAUAGGUGUAGAUAUGAAAUACAUUCUCACCAAAUUUCAACUCUAAACUCUACUUCAUUAGAGAAAAAAAAGAAACAAAUUUUAGGUGAAUAGUGUCAUGUUAUUAUUCACUUAAAAUUUGUCUUUUUGUUACUCCUAAACAAAGUUAAGUUUGAAGUUGAGAUUUGGUGAGAAUGUAUUUCAUAUCUACACCUAGAUCUAGUAUUUUUUUUCAUGAAUUUAUGAAACUUUUAAGUAUGAUUUUUACCGGUUUCCAAUACUUAGCUCGUUUUCACCGGAUGUCCCCGAAUAACUACAACUAGUAUUUAAUAUCUAUCCAAUAAAUCACUAACUCAUUUAUCAUUUUUACAUUCUUUCAUUCUUCAUUCAUCACUCAACACUUUUAGAUUAUUUGUGUGAAACCCAACGCUUAAAAUUGUCUUCGGGGAGCGCUACAAAUCGGACGUCCGAUAUUAUGCAAAACAUCGGAUGUUGUUGCACAAUAUUGUUACGAAAUGUUUCACAUGUUACACUACUUGAUGAACAAAAUGUUUCAAAUGUUUCAUCAAUCAGGAAAAAAAUGUGUCAUUUCAUAAAUGAAAAUAUUUCUGUUCUCAAACAGAAAUAUUUCGGCAAAUAGAAACAAUGAAACCCAAUUGACUCGCGCCGUGAAACAUUUUAGUGUAGCGUUUGAAACUUUAGGUUUCAUGUAAUGCCCCGAGUUUCAAAAUAGUAUAUUUCGGGGAAUAUUAGCAUAAACGCGCAAAAGUUUAAUUUUUAAACCGUUGUUCGAAUAGGCGAUCAGGAACCGUGGAUGCGUAGAGCUCGCCGAGUAGUGCAAAAUAGACUAUGAGUUUAUAAUAAUCGGAGUCCGAACGAAGUACUGGUGAUUAAAUUAAUUUGGGCCAUUCGAUCUUCAUCAGGAUAUCUAUUUAACCAACUGAAAAAAAAAGAAAAAAAGGAGAAAAGGGGAAGAGAUCGAUAACCCUGCAGCCGCUACAAACCCUAGCCGCCAUCACCCCAAUCGCUGCUGCGCCGUCGCCACAGGUUUAGCCAUCGCCGUCCAGCGCCACUCCUGCUCGACUCCUUGGUGACGUUUCUGUUUCUGUUAACGUUCCCCGCUGCUGCUACUGAUGCUGGUCUGUUGCUGUGCUUCUGGAACGAACAGAGAACAGGAGUUUCAGGAAGCGGGGAAAGCAGGAGGAGAAAAGAAGGAAAAAGGGAAGAGAGGCAAAAGUUGGGGAUUUUCUGGGUUUUCACAAAUUGAUCUCAAAUUCGAUUUCUCCUCUGUAAGGGUACCUAAUGAUAUUGAUCGGCACGGGACGGGAGUAGCACCCUUGAACUACACAUUAUUAUUGCACACUAUUAAAAUUUAGUUUUAGAUUAUGUUUCUACUUAGAUAAGUUUUGCGUAGAACUUAUGAAGGUCAUUUAAAGUUCUGGUCCUUAUUUUUACGUGGAAUUUGUAGAGCUAGGAUGGGUUGGAUUGUGUGGUUUUUAUCGUUAUUGAGUUAUUUUAUAACUACCUGUCGUGGAUGUCUGUAUUUUUAGGUGACUCUGCUGAAAUUUCUAAUAAUUUUGGGA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
56.91%
ME_num:
MEP:
42.89%
HE_num:
HEP:
0.0%
Type:
MCR ()
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
shoot
Tau :
0.77
Avg Expression:
1.18
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hN | -3.72620838361631 | 0.00254772363823804 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hN | -3.84719590809655 | 0.00133188525428521 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN | -3.97902742331294 | 0.000834832713805275 |
| 4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dA | -4.44787244867216 | 0.00688503283836983 |
| 5 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN | -3.81609011229484 | 0.00670386443911904 |
| 6 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA | -4.87191215650193 | 0.00165500667827741 |
| 7 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hA | -3.37703412290518 | 0.00077928707701851 |
| 8 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA | -5.27754793051955 | 0.000310488922422534 |
| 9 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN | -4.29664152564879 | 0.00024745164339371 |
| 10 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_L8 | -1.22480514752842 | 0.0163498003437991 |
| 11 | Nipponbare // leaf // Non-inoculated--/--Nipponbare // leaf // Inoculated with Pyricularia oryzae | -1.17460511728137 | 0.039023780807963 |
| 12 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hA | -4.26491200977825 | 0.0019324763080051 |
| 13 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA | -4.443915926023 | 9.69867600797017e-05 |