Chr:
Chr5
Start:
29187689
End:
29189433
Strand:
-
Ref_name:
LOC107280884
Sequence
(XR_001545861.2):
GAUUGGUUGUCGUUAAUUCCUGGUGGGGCUGCCCUCGUUACUUGCCAUCUUUUUAAUUUUUGAUUAAAAUAUGAUCCUAGCACAGAUCGCGUUGUGGGAGCAGGGAAGCCGGACGGCGAGCGACCUCCCCCAAUCCACAUGGGCCGCCGCCUCCAGACCCGCCUACGACGUCGGCCACCACCACCUUUUGCUCAACACCGGCUUGGUCCCGACCUAUUGCCGCUGCAGCUGUCCAUCGCUCCUCCUGACCUAGCGCCGCCGCCGCCGUGACGACCUCCCCCUUCACAGCGCUGCACCGGCUCCCCAGCUGCCGCCUCGAUCUGCAGCGCGUGAUACCUCCUCAUCACCAAGAACGGAAGGUAUCCAUCUAUUCAUCCCAUACCUAAAUUCCCCUGGUUUUGAGUCACACCCUAAAUUUCUAGCAUAACAGGAAGAUAAUUAUUGUGCUAGUACUACUUUGUUUCAAACAAAAGAAUCUACGCGCUGGAUGCUUCGUCUAUGUGCUUGAUGUUGCUUGCAUGUAGCGAUGCUAGUAGGUUAGAAUUAUUACAGUCCAUGCCUUUUGGAUUCAGUUUCAAAGAGUAAAUGCUGAUUACUUUCAGGAUUUUCCUUUUGGAUUUAGUUUCACAUUUACAUUUCUCAUGUCGAUAGAGAUCAGAUUAUGGUGUCGAAAGGAAUGAAGUUCUGAUAGUUGUUUUCAAUUGAUCUGAACAGGAAAUAUCUGCAUUUUUUAGUUACAGUUGUUUGGUUCUUCUUUCCUUUGGUUCCAAGAGUGUUCAGGUUUGAAAAUGUGGCCUAGGAAGACCUUCCAUCUCCUUCAAUUUCUUGUUUUUGUCUUUUAGGGAGAAACCUGAAAAGCUGAAACUAAGUGUAUGGAUUCAAUCUUUGUUUUCGUGUUGAGUUCUACUGCUUCUUGCUGACACAAAUGGUACAUCAUGACUAUAUGAUGUUAAAUUGCAUAAUAUAAUCCAUUUUAUUAGUGCAGAUGCCAGAAGCUGCUGAGUGGAAUGAUGAGAACACUUGAUUUUAUAUAUCUGUGAAACCCUCACAGUGGCACGACACUCCUUGACAUUUCCCUUGUAGGUGCAGCAGCGCCGUGCAGUGCCCCACUGGGUACAAUGGUCGCAUGGUUGUUAACUCGUCCCUCUGGUGACUCACAAGCAGUUUCUUUUUUCUUUUAAAAAAAAUAUGUAUAGAUAUGCUAUAGAUUUUACUGACAGUGACCAGCUCAGCUCAGCAAGCACGCAAAGGAGAAUUAGCAAAGCUUUUGUAGGAUCUAGAUGAAAUGGAUGGGGUUCAAUCCUGAUAAUUGAGAUGGUGACAAAGCAUUCCUCAUUCCUUAAGCAAAGUUUCAGGGCUCACAACAAGCAUGAAACAAGCCAAGAGCUGUACAACCUUUAGUUGAAGACUACUAUAAAACUAUAUAGCUCUCUUGUAGUUGUACGGAAAUUUAAUUAGAAUAUGUACAUACAUUUCCAAUUAUGUAACAAACGAGUUAAAUUAUUUGCAUUCGAUCAAUAAAGAUUUGUUAAUAAUUUUCAUUUA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
9.96%
ME_num:
MEP:
80.28%
HE_num:
HEP:
9.55%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
anther
Tau :
0.66
Avg Expression:
5.90
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hN | 4.51463794296713 | 1.1370359296601e-10 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hN | 4.61526302895758 | 2.15988515118985e-11 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN | 4.62604433376567 | 7.32425401576877e-12 |
| 4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dA | 3.23170206284733 | 0.000301017190579767 |
| 5 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN | 4.43476760188915 | 7.33701159993634e-10 |
| 6 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA | 3.09741174768284 | 0.000250223248143925 |
| 7 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hA | 4.25571363724093 | 1.04784664754344e-09 |
| 8 | Nipponbare // leaf // H2O_control--/--Nipponbare // leaf // Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | -1.08026746425342 | 0.0252186814866164 |
| 9 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_BLS256 | -1.93533563513355 | 1.41424625497911e-10 |
| 10 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_CFBP2286 | -1.47825364375898 | 2.10097595736602e-05 |
| 11 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_BLS279 | -1.9078361605326 | 5.40064743520124e-11 |
| 12 | 9311 // leaf // control--/--9311 // leaf // salt | -1.63261046552592 | 0.00124886986327493 |
| 13 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA | 3.3154298567521 | 1.84101312642836e-05 |
| 14 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN | 4.17025262504612 | 1.23522307085274e-09 |
| 15 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_L8 | -1.64086273337149 | 1.50180407107069e-07 |
| 16 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_B8_12 | -1.84055238481739 | 1.38516190272209e-12 |
| 17 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_RS105 | -1.51400712497386 | 1.91440627463329e-07 |
| 18 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_CFBP7341 | -1.22508369925203 | 0.000222005753727389 |
| 19 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_CFBP7331 | -1.41219021735507 | 1.93189856472663e-05 |
| 20 | Nipponbare // leaf // "wild_type,control,2"--/--Nipponbare // leaf // "wild_type,drought,2" | -2.03633380699081 | 0.00308569977691997 |
| 21 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_CFBP7342 | -1.63474420551354 | 1.05566440760501e-09 |
| 22 | Nipponbare // leaf // control--/--Nipponbare // leaf // drought | -2.03638775331018 | 0.0031498148857609 |
| 23 | Nipponbare // leaf // "wild_type,control,1"--/--Nipponbare // leaf // "wild_type,drought,1" | -2.03652708736293 | 0.00309531558760393 |
| 24 | Nipponbare // leaf // Watered;Long_Day--/--Nipponbare // leaf // Drought;Long_Day | -4.91127695868096 | 3.11115185058956e-18 |
| 25 | Nipponbare // leaf // Non-inoculated--/--Nipponbare // leaf // Inoculated with Pyricularia oryzae | -1.32515999455963 | 6.00891552907695e-06 |
| 26 | Nipponbare // panicle // AM--/--Nipponbare // panicle // PM | -3.78329186080919 | 9.00732673139814e-37 |
| 27 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hA | 3.90622550361026 | 1.82581427972796e-07 |
| 28 | 9L136 // leaf // control--/--9L136 // leaf // salt | -1.28193584026389 | 0.015714591237173 |
| 29 | Nipponbare // leaf // Watered;Short_Day--/--Nipponbare // leaf // Drought;Short_Day | -2.88232783751575 | 2.7195640430617e-17 |
| 30 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA | 3.15087980182738 | 2.54014321147842e-05 |