Chr:
Chr5
Start:
12993961
End:
12997464
Strand:
+
Ref_name:
LOC107280854
Sequence
(XR_001545780.2):
CCUCCACCUCCCCUCGGUCGCGUCUUCCCCCCUUCCUCCCCGCAUUCACGAAUCACACGUUCCCCCCAAACCCUAACCGUGCCGCCUCGCCUCAGAUACCCAACGCCCGCGCCCCCUUCUCCACCUCGCCUCCACCGGAUCCGGAAUCCGGCCCUCUCCACUACGCCGCUGUCAGGUCGUCAAUGAUCCCUUCAUUGCAGCACCAUCAGGUCGUCGGCGCCGCCGCCCCUUCACUCUUCUCCCACCGUUUGUCGGCGAUGAUCACACCUUCGGCGCAACUGGAUCCCUCUCCACAGCGCGUCGAUGGCUUUUUUUUUUUCUCCCUUUCUGCAAGGCGGAGAAGGUGAAAGGGUGCACAGCUACAGCUGUAGCUGCAAGAAAUCCAAGCGCCUCAAUCUGAAAGUUGAAUAGAGGAUUUUGAGUGAUCGACAGUUAAGUGCCAUUGUCCUGUUGAAACAACGAUUUGGGAUUACUGAAGAUGACUUCCUCCUUGCUUGCGUGCUUGGUUCGCGUAUAGAAUGGUUACUCUCAAGUCUAUGUGUGUGGUACUACUUGAUGAUAUGAUGGAUGGUUUCCAUGCUAGGAGAUACCAGAUUGCUGGUCACUUGAGGUUUUCCGAUCCAUCUUCCAUGAUUCUCUCACUAAACAGAUGGUAUUUCAGAUGAAGCCUUAUUUUCUUGACUACUUGACUUCUUGGAACUAUGGAGUGAGGUCUACAAAAUUCUCAAGGGCAGAUGCUUGUCACACAUACUGGAGCAGAUGGUCUUGCAAAAUGCAGUAUAUUGAAGGGCAUGUGAACCAUCUACCUCUUUCUCUCAUAAUAUUAGAUUUGCUUAUGUUAAUAUUGGAGAUGUCGCUCUAUUCAGUACAUUUCUUCUCUUUUGUUUUGUUCUCAUAGGCCUGGAAGACUGAAACUCAAAUGCAAUCAUACUUUUUCACUUCUGUCAUGUAUCUGAGUAUUAUAGGCUGUGGUACUAUACAAAUUCUACAAGCUAACAAUAUUGUCUGUCUUUCUCUUAUAUACAUACUAUUCUCUGUUGCCCCUUCUCUUACAUCGAGCAUUGCAUUAUGUCUUUUAAGAAAGUCUGGAUAUAUAUAUAUAUAUAUGUGUGUGUGCGGGCGGGCGCGCGUGCGUGUGCGCCUUGCUUUUGCUUCAGGAACUAGGUAAAUCAGUUUACUUUACAAGAAACCAUCAGCUUUGGUUGUAACUUUAUCAGAUUUUGAUGCUUACCUAUUGACUAAUCAAGUAAAAUGGUUCUUUUAGAGUACCUCCUAGAUUGUGCGCAACCAUGUGGAGUCGUAGGUAAUGGCUGCAGCUCAUCCAGUGCCCGACAGCAUAGGUCCUGGCUUUUUUAUUACUCGUGCAGAUAAAAAUUAUUCUCAAAUAUACCAGUUGCAGAGGACCUCAAACUUGGUUUUAAUGGUGUUCAAUGGUGUCUAGGCAAAAUUGCUACCAGAUAGCUAAACCUACGUGUAGAGCCAAGUAUAAGCAUGUGGACAAGAAUAUGAGUUGGAUAAGAAUGAGUGGUUGGUUACCCAGAUCCAAAAGUUAAGCUUUUGCCAUGGCAUGGCGCCUUGGUAUUUAAUAAUAAGUUGAAUGUCCUUUUUUUUUUUUUUUGCUCUGCUACUAUUACUAUCUACAUCAUCUGUCUCAAAAUAAUUGUAAUUCUAGGUUGUUUAGCAUAUACUCAUUAAGGUUUGAGAAAAAGACUAUGGUGCCCCUCAUUAAAUGGUGUAUAGAUGAAAGUGAGAGGGUGGUUAAGGGUAAAAUAGAGAAAUUUAAAUGAAAUGAUUGAUGGGGCAAUUAGUAGAACUCUAGAGUUACAACUGUUUUGGGAUAAAUUUUGAAUCCUAGAAAUUUGUAUAGUUCAAUGGAUCUAUUUUUCGGAACUGUAGGUUAACACCUCUCAGCAGGUACAAGAGGGAUAAGUUUAUUUCCUCCAUGUUAAUUUGACUUGACAUGCACUGCCAUCAGUAAAUGUAUAACAAAACUUUUGUUGUUUAUUGAA
Sequence
(XR_001545782.2):
CAUCCUCCACCUCCCCUCGGUCGCGUCUUCCCCCCUUCCUCCCCGCAUUCACGAAUCACACGUUCCCCCCAAACCCUAACCGUGCCGCCUCGCCUCAGAUACCCAACGCCCGCGCCCCCUUCUCCACCUCGCCUCCACCGGAUCCGGAAUCCGGCCCUCUCCACUACGCCGCUGUCAGGUCGUCAAUGAUCCCUUCAUUGCAGCACCAUCAGGUCGUCGGCGCCGCCGCCCCUUCACUCUUCUCCCACCGUUUGUCGGCGAUGAUCACACCUUCGGCGCAACUGGAUCCCUCUCCACAGCGCGUCGAUGGCUUUUUUUUUUUCUCCCUUUCUGCAAGGCGGAGAAGGUGAAAGGGUGCACAGCUACAGCUGUAGCUGCAAGAAAUCCAAGCGCCUCAAUCUGAAAGUUGAAUAGAGGAUUUUGAGUGAUCGACAGUUAAGUGCCAUUGUCCUGUUGAAACAACGAUUUGGGAUUACUGAAGAUGACUUCCUCCUUGCUUGCGUGCUUGGUUCGCGUAUAGAAUGGUUACUCUCAAGUCUAUGUGUGUGGUACUACUUGAUGAUAUGAUGGAUGGUUUCCAUGCUAGGAGAUACCAGAUUGCUGGUCACUUGAGGUUUUCCGAUCCAUCUUCCAUGAUUCUCUCACUAAACAGAUGGUAUUUCAGAUGAAGCCUUAUUUUCUUGACUACUUGACUUCUUGGAACUAUGGAGUGAGGUCUACAAAAUUCUCAAGGGCAGAUGCUUGUCACACAUACUGGAGCAGAUGGUCUUGCAAAAUGCAGUAUAUUGAAGGGCAUGUGAACCAUCUACCUCUUUCUCUCAUAAUAUUAGAUUUGCUUAUGUUAAUAUUGGAGAUGUCGCUCUAUUCAGUACAUUUCUUCUCUUUUGUUUUGUUCUCAUAGGCCUGGAAGACUGAAACUCAAAUGCAAUCAUACUUUUUCACUUCUGUCAUGUAUCUGAGUAUUAUAGGCUGUGGUACUAUACAAAUUCUACAAGCUAACAAUAUUGUCUGUCUUUCUCUUAUAUACAUACUAUUCUCUGUUGCCCCUUCUCUUACAUCGAGCAUUGCAUUAUGUCUUUUAAGAAAGUCUGGAUAUAUAUAUAUAUAUAUGUGUGUGUGCGGGCGGGCGCGCGUGCGUGUGCGCCUUGCUUUUGCUUCAGGAACUAGGUAAAUCAGUUUACUUUACAAGAAACCAUCAGCUUUGGUUGUAACUUUAUCAGAUUUUGAUGCUUACCUAUUGACUAAUCAAGUAAAAUGGUUCUUUUAGAGUACCUCCUAGAUUGUGCGCAACCAUGUGGAGUCGUAGGUAAUGGCUGCAGCUCAUCCAGUGCCCGACAGCAUAGGUCCUGGCUUUUUUAUUACUCGAUAAAAAUUAUUCUCAAAUAUACCAGUUGCAGAGGACCUCAAACUUGGUUUUAAUGGUGUUCAAUGGUGUCUAGGCAAAAUUGCUACCAGAUAGCUAAACCUACGUGUAGAGCCAAGUAUAAGCAUGUGGACAAGAAUAUGAGUUGGAUAAGAAUGAGUGGUUGGUUACCCAGAUCCAAAAGUUAAGCUUUUGCCAUGGCAUGGCGCCUUGGUAUUUAAUAAUAAGUUGAAUGUCCUUUUUUUUUUUUUUUGCUCUGCUACUAUUACUAUCUACAUCAUCUGUCUCAAAAUAAUUGUAAUUCUAGGUUGUUUAGCAUAUACUCAUUAAGGUUUGAGAAAAAGACUAUGGUGCCCCUCAUUAAAUGGUGUAUAGAUGAAAGUGAGAGGGUGGUUAAGGGUAAAAUAGAGAAAUUUAAAUGAAAUGAUUGAUGGGGCAAUUAGUAGAACUCUAGAGUUACAACUGUUUUGGGAUAAAUUUUGAAUCCUAGAAAUUUGUAUAGUUCAAUGGAUCUAUUUUUCGGAACUGUAGGUUAACACCUCUCAGCAGGUACAAGAGGGAUAAGUUUAUUUCCUCCAUGUUAAUUUGACUUGACAUGCACUGCCAUCAGUAAAUGUAUAACAAAACUUUUGUUGUUUAUUGAA
Sequence
(XR_003242636.1):
CAUCCUCCACCUCCCCUCGGUCGCGUCUUCCCCCCUUCCUCCCCGCAUUCACGAAUCACACGUUCCCCCCAAACCCUAACCGUGCCGCCUCGCCUCAGAUACCCAACGCCCGCGCCCCCUUCUCCACCUCGCCUCCACCGGAUCCGGAAUCCGGCCCUCUCCACUACGCCGCUGUCAGGUCGUCAAUGAUCCCUUCAUUGCAGCACCAUCAGGUCGUCGGCGCCGCCGCCCCUUCACUCUUCUCCCACCGUUUGUCGGCGAUGAUCACACCUUCGGCGCAACUGGAUCCCUCUCCACAGCGCGUCGAUGGCUUUUUUUUUUUCUCCCUUUCUGCAAGGCGGAGAAGGUGAAAGGGUGCACAGCUACAGCUGUAGCUGCAAGAAAUCCAAGCGCCUCAAUCUGAAAGUUGAAUAGAGGAUUUUGAGUGAUCGACAGUUAAGUGCCAUUGUCCUGUUGAAACAACGAUUUGGGAUUACUGAAGAUGACUUCCUCCUUGCUUGCGUGCUUGGUUCGCGUAUAGAAUGGUUACUCUCAAGUCUAUGUGUGUGGUACUACUUGAUGAUAUGAUGGAUGGUUUCCAUGCUAGGAGAUACCAGAUUGCUGGUCACUUGAGGUUUUCCGAUCCAUCUUCCAUGAUUCUCUCACUAAACAGAUGGUAUUUCAGAUGAAGCCUUAUUUUCUUGACUACUUGACUUCUUGGAACUAUGGAGUGAGGUCUACAAAAUUCUCAAGGGCAGAUGCUUGUCACACAUACUGGAGCAGAUGGUCUUGCAAAAUGCAGUAUAUUGAAGGGCAUGUGAACCAUCUACCUCUUUCUCUCAUAAUAUUAGAUUUGCUUAUGUUAAUAUUGGAGAUGUCGCUCUAUUCAGUACAUUUCUUCUCUUUUGUUUUGUUCUCAUAGGCCUGGAAGACUGAAACUCAAAUGCAAUCAUACUUUUUCACUUCUGUCAUGUAUCUGAGUAUUAUAGGCUGUGGUACUAUACAAAUUCUACAAGCUAACAAUAUUGUCUGUCUUUCUCUUAUAUACAUACUAUUCUCUGUUGCCCCUUCUCUUACAUCGAGCAUUGCAUUAUGUCUUUUAAGAAAGUCUGGAUAUAUAUAUAUAUAUAUGUGUGUGUGCGGGCGGGCGCGCGUGCGUGUGCGCCUUGCUUUUGCUUCAGGAACUAGAGUACCUCCUAGAUUGUGCGCAACCAUGUGGAGUCGUAGGUAAUGGCUGCAGCUCAUCCAGUGCCCGACAGCAUAGGUCCUGGCUUUUUUAUUACUCGUGCAGAUAAAAAUUAUUCUCAAAUAUACCAGUUGCAGAGGACCUCAAACUUGGUUUUAAUGGUGUUCAAUGGUGUCUAGGCAAAAUUGCUACCAGAUAGCUAAACCUACGUGUAGAGCCAAGUAUAAGCAUGUGGACAAGAAUAUGAGUUGGAUAAGAAUGAGUGGUUGGUUACCCAGAUCCAAAAGUUAAGCUUUUGCCAUGGCAUGGCGCCUUGGUAUUUAAUAAUAAGUUGAAUGUCCUUUUUUUUUUUUUUUGCUCUGCUACUAUUACUAUCUACAUCAUCUGUCUCAAAAUAAUUGUAAUUCUAGGUUGUUUAGCAUAUACUCAUUAAGGUUUGAGAAAAAGACUAUGGUGCCCCUCAUUAAAUGGUGUAUAGAUGAAAGUGAGAGGGUGGUUAAGGGUAAAAUAGAGAAAUUUAAAUGAAAUGAUUGAUGGGGCAAUUAGUAGAACUCUAGAGUUACAACUGUUUUGGGAUAAAUUUUGAAUCCUAGAAAUUUGUAUAGUUCAAUGGAUCUAUUUUUCGGAACUGUAGGUUAACACCUCUCAGCAGGUACAAGAGGGAUAAGUUUAUUUCCUCCAUGUUAAUUUGACUUGACAUGCACUGCCAUCAGUAAAUGUAUAACAAAACUUUUGUUGUUUAUUGAA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
2.64%
ME_num:
MEP:
45.33%
HE_num:
HEP:
51.83%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
callus
Tau :
0.76
Avg Expression:
20.51
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 3hN | -1.10730670673811 | 1.77892374844043e-06 |
| 2 | Nipponbare // shoot // "Control,22C for 10 min, then 30C for 1h50 min"--/--Nipponbare // shoot // "Heat,42C for 10 min, then 30C for 1h50 min" | -1.63608501410112 | 3.93287460144983e-06 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 3hA | -1.00450413707785 | 8.01766856952095e-06 |
| 4 | Nipponbare // shoot // "Control, 22C for 10 min, then 30C for 50 min"--/--Nipponbare // shoot // "Heat, 42C for 10 min, then 30C for 50 min" | -1.54397750202617 | 0.000417482829892451 |
| 5 | Nipponbare // shoot // "Control,22C for 10 min, then 30C for 10 min"--/--Nipponbare // shoot // "Heat,42C for 10 min, then 30C for 10 min" | -1.06420563081297 | 0.00458604364842841 |
| 6 | 9311 // leaf // control--/--9311 // leaf // salt | -1.07392630787954 | 0.0236426054320897 |
| 7 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA | -1.47896416427403 | 3.69893108912919e-15 |