RiceNCexp
Rice Non-coding RNA Co-Expression Atlas

OSA-LNC107280849

Function Link

Tissue-specific Expression analysis
Differential Expression analysis
Co-Expression Curve
Network analysis

Basic Info

Chr:

Chr5

Start:

25953438

End:

25955835

Strand:

+

Ref_name:

LOC107280849

Sequence
(XR_001545773.2):

UGGCUGGGGCACUAGGCACUGGCCACGGCCAUGUGAACCCAAUGUGGCAGCAACUGCCGCGCCGCCGAAGGCCAUGUAAAUUUGUGCUCCGCAAAGGCUCCAUGAGGUGUAGGCUCCACAUAUGUGAAAACGACGGCGGCUGGCUCUGCUGCAAGAUUAGUGUAGCGGCUUCCUGACCAAAGGUGUAAAGCAUCACUGCUAUCAAAGUCAUUUGACUGAUAUCUGAUUGACGUCCUCAACGGUUGACACAUACUCAUCGGUCAAGUCCUCAACGUACAUGGAGUUGAAUAAGUUUGUUGCAAUCCAUUAGCAAACACCAAAUGCAGAGUUAGUUUUUUGGUGGUACAAGAUGGUUAUGCACAUGAGCAAGAGAGGCAGAGAGCAAGUGAAGGGGCGCAAGCAACGAUGUAUCACACAACUCACACUCACUGGUGCUUUGUCCAGCACCAAACCUCAGCACCAGAUUUUUGUGCCAAUAAUCACAUCAGCUUGGGAGAUGUCUUCCUGAUGCGGUGGGCAAAGGUAUCGAGGGCCAUGGAACCGGUUGAUAGCCCGAGGAGCAAGAGGGAUUUACAGGAGGUGGAGGACAGGGAACGCAUCGCAGACUUGUUCUGUACAUGUUUAUUAGAUCAUUGUGACAGAGUGACAUGUUGCACUAUCAAGUACCAAUAGUUGGUUGGGAUUGGAAUGAUCAAAAUGAGUUGUUCAUGUUUUAGAAGGCUGUGUGUUUCUCCAUUUUAGUUUAGAUUUGAGAAGGUUCUAGGUUUUUCCUUUAACCUUUUCACUCUGUUUCUCGCCCAACAUAACUCAGUUUUUCUCCUUUUCACUCUGUUUAAUUUAUCAAUUUCUAAAUAGUGCCACACGGUCCAAUCUCCGGUAAAACUGUCAGCUUGAGAAAAGUGAUGUGGAGGAACCAUGAACUCAAUGUCUUGCUGCAUUGAACUAAUAUGAAUAAAAGGGUAAAGUUUAAAUAA

Expression Capacity

HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.

HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.


NE_num:

1

NEP:

0.2%

LE_num:

74

LEP:

15.04%

ME_num:

181

MEP:

36.79%

HE_num:

236

HEP:

47.97%

Type:

HCR (High-Capacity ncRNA)

Tissue Specific Expression

cutoff: tau > 0.9 and Average expression in the tissue > 10


Tissue :

carpel

Tau :

0.77

Avg Expression:

38.08

Tip: OSA-LNC107280849 is not a tissue-specific expression ncRNA.

Differential Expression

cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01


Num. Condition log2(FoldChange) Padj
19311 // leaf // control--/--9311 // leaf // salt2.360793751139593.07499399138132e-44
2Nipponbare // panicle // AM--/--Nipponbare // panicle // PM-1.96535898409462.7874688528237e-05
39L136 // leaf // control--/--9L136 // leaf // salt1.837062687019962.14266642620804e-30
4Nipponbare // leaf // Watered;Short_Day--/--Nipponbare // leaf // Drought;Short_Day1.542879821827990.0477507992543909