Chr:
Chr4
Start:
20816865
End:
20822506
Strand:
-
Ref_name:
LOC107280812
Sequence
(XR_001545616.2):
CGUAAGUUAGGUGGGCUGUGGUGGGCUUCUUCGGCCACGGUGAUGAAGACGAUGGGCCUGCAGCCUCGGACGAGUCGUGAAAUCCUCCUCCUCUGCGCGCGGGGCGAGCGGCGAGCGGCGAGCAGCGCCAGUCCGCCGACCGCCGUCGCCGCCGACGGAGAUGGGGCAGAUGUGCGACGGAGCAUCUCCCUCCGCGGUACGGUCUCGCCGCCGCUACGUCUCCUUUGUACCAGUUGUUUCUUCGAUUUGGGGGAAAGCAUAUUUUGUUAUUCCACAAAAUGUUAGCAGAUGCGCCGCUGAGGACGAUGCGAAUCGCUCGAGAUACUGAGGGAUCCUUGGGGGCUAGCCCGGAUGCUCGCAAGCGUGAGAUUUGUGGGAUGCGUCGUGCUCUCCGGUAGAUUAUUCGAUUGGAAACCGUCGCCAUUUUGUUGUUCGUUAAAAGGAAAAAUAGAUUUGAACAUAUUAGGUUUUUCUUUUCCUACUAUUUUUGUCAGUACUUUGUUCGAGGGAAAGAAUGCUGUAUUUAUGGUUCAUCGUUCACUGAACAAGCGAAUCGUAAGAUUGGCAGUGUUAACUUCGUUGGGCAUUUGGGCCUAACUCAUAGUACAGUAAUACUAUAGUCUUACUGGAAACAAACAAGACACCAGUUCAUACCAUUGAGCUUGCUCUGAUCUAUCUUUGUACCAGGGAGAAAGUUACUUGUCAGGUGCUCAAAGCAGCGCUACAGAUGGUUUUGAUUUCUACAGUGAAUGGAAGGCAUUUGUGCUAUUUGAUUUCUACAGUCGCAAUGGAAGGCUUCUUGUUGUGUAUUGUUUUUUUUCAUAUAUCCCAUGCAGUGUGUCAUUGGAUUGGAUGCCAUUUCACGAUGAACAGAAUUGAAGGUUCAGACUUCAGACAACUACUGAAGGGAACCUCUCAGGUUUACAUCAAACCUAUCUUCAUGUCAAGAGUUAAUUGGCUGGUGCACUGCUUGUUGUAAAGCUUAUUCUGUCCAGCUUCUUGCAGUUACCUUGCUUCUUGUGACGACUUGUGAGGCUUGGCACAUGCACACAACAACUACUUGUGAAGCUAAUCCAACUCUACUUAGCUGGUUAUUACCAUCGACUUGCCUUGACCUGUUCACCAAAGUUUGCCUUUGGCAGAUGGAAUGGCCUAUAAAUCGCAACUAACUGCAGCAGCAGCAACAACUGUAGAUGAAGAAAGAGAGACAAUCAAACAUGCUCAUCCGUUAUCUUCCUUCAGUGAUUGGUCCAAAUGGAAAAGCUAGGAGACAGAAAAUUUAGGCUAGACUUUGUAGUGGGCACUGAUGAGAUCAAUUAUUAUAUUCUUAUCCAAAAGCAAAUUUGUCUGAUUUUGAUCACAAAUUUGGACCACUCGAUCAUGAGUUCAUGACCAAGGGAUGUAAAAUAUCAACUUCAAUUAGCAUCUUCGCCGACAUCAGAAAACCCUUUCACACACGGAGUUGCACAGUGCAGAGCAUGGGCCAUGGCCAACAACAAAACAGAAGUCCAAGAAGGAUGCGGAGGAUUUGGAGAGGAGGCAAGAAGAAGUGAGGGAGUCAACGCAAACAGUCAAAAAUGCAAGUAUAGGCGUCAGAAUUUUUUGAAACGAGACAAGCGUAGGAAUUGACUGAAUGACGCUCAGUGUGAGGUUGCAACUGUGCUAAUGCUGGAACACCGAAAUCUGUAGUUUGUGCAACUACCUGGUAUAAACUAUUUUUUUCUUUUACUUGAGAUCAAGUUGUUUUUUCUUUCCUUCCACAUGUAUGUUGAUUUUCUUUGAAACAUCUGAUUUGAAAUAUGAGUGCACAUGACAAUGUGUUUAGAGUGUUUAGCCAUGCCUUAA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
14.43%
ME_num:
MEP:
81.1%
HE_num:
HEP:
4.27%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
shoot_apical_meristem
Tau :
0.75
Avg Expression:
7.32
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
Num. | Condition | log2(FoldChange) | Padj |
---|---|---|---|
1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA | -1.2165635885673 | 0.0200196466860361 |