Chr:
Chr4
Start:
5288491
End:
5292242
Strand:
+
Ref_name:
LOC107280798
Sequence
(XR_001545576.2):
UGCCUCAAACCUCUAGUCAUGAUACUCCUGAUCCCAUGUCACCGACAGGCCCUGUGAAGGAAACCCGGCACUUUCCAAACUUUGGCAAUUUUCAUCUAUUUCGUUCAUAGGUGCCAAAUUUGUGUGUAAACAGUUAGUUCUUUUCUCUCGUGAUCCGAUGCUUCGGGCGAAACCAAUUCCCAUGGUGUGAUGGGUGGUGUGUACAGGGUCCGGGUACAUAUUCACCGUUGCAUGAUGAUCCGCGAUUACUAGCGAUUUCAACUUCAUGUUCUAAGUAUAAUAUUGUUUAUUAAUGUUGCAUAAAACCACUAACUCAAUGGCAAGAAGAAGCUGAAGCGGAAGAGGAGGAGCAGAAGAGGAGAUGUGAGUUCCAGAGCAGCCACGGCGGCGUCGAGGGAUGAGAUCCUCUCCAAGAUUGUCACCGUCGCCGGUGACGGGACUGCCCUUCUCCCCCCCGAGGCACGCACCGUCACGGAGUGCUCUCUCCAUGGCCUCAUCGCCUUCCUCGUAUCAUACUUCUGCUUCCUCUCUCAUCGACGCGUGUUCGUCCAGGCAACCCGGCCGACAUCGAUGCCUUCCUCACCGGCUCAUUCGCGCUCGCCUCUCAUCUUGGCAGCAUCAUCUCAUCCGCCACAAGAAUCAUUCAGUCGCAAGCCUCUCUGUUCAGGAUUUGUGCUGCUUGUCAGGAUUGCUCCAGAAGCAGCCACUCAAGCUCAAGAAAUCGGACGACUAACCCAUGGAUUUUGUUGCUCAACGGCUUCAUCGCUUGGACAUGGAUGCUAGUACUGACAGUGUGCCAGCAAACAGCAGGUUGAAUGAAUCACUGCGAAGUGUUCUUCUUGACAGAAUCCUCAAUCUUUAUCUCAAGGCACUUUCUCGGCUACCAAUGGAAGAUUUUUGGGCUCCUCAUCACAGGACCCUGCUCAAGGCAGGCUACUUGCUUAGGUCCAUUGAGCCCUGUUAGCAAUAUCAUCGACAACACCAUCUGGUAUGACUCUUUGUUCCUCUCAUCAGAGAAUUUCGAGGUGGAUAUUGUUGGAUAGUCAUAGUAUAGGAAGGAGAGAAAUACUAUAAAUAUUGACACGUUGUAUUGAGGCUUGGGGGUCGGUAUAUAUAGGAAUACAUGUAUUGGAUCUUAAGUAAACUCAGAGAGAUAGAGAUGGAAACUAAUCCUAUCCUACCAUAGCAAACCUUAUACAAUACGAUCUUGUCUACAUACUCUAACACCCCCCCACCCCGCAGUACAAGCGUGAGCCGUGCGGACACUUGGAUUGGAGAAGAAACCAGCAAAAAUGCUCAAUACGGAUGAUAGCCCUUUGUACCAUAGUCGACGUAGCCGAAGCGAAAAGUGCGAUGGAGCCAUGGUCGAUGAAGCUGUGCGUAGAGUAGCCAUGGUCGGUGUAGCCGAAGUUGGGAAGCUGAUGUUGAGGUAGCCGAGCCAUAGAGGUGGUAGAGCGCGCAAGGGGCGCCAAGGAGUAGUCAUGGACGCAGGGGUGGGCGUCGUGGACCAAGGUGCGUGAGGACGCUCUGGGAGGGUGCAAGAGAUUUUGAGAAAAUUGUUUGUGGGGAAUACAAACUCACAAAUCCAGCUAUUAUCAAUAGUUGGAAGAUGAAUGAUAACCAUCUAGGCCUUGUCACUGAUGACUUUAUCUAUUUGGAUGUUGCCUGGGACGUCAAGUUGAUCCAAUAUAUGAAUCAUACCGCAAGGGUGAUGAAUCUUGAUGUGAAUGAAGAAAUGAAGCGGAUAAAACCAAUGGGUAUUGUAGAAUAAGUUGGCGCUUCGAAGGAAGAAAACAAUACGAGACCACCGAUGUCGACGCGCUGCACCAGCCAGCGACGACGCCGGGUUCAUAAUCAUCAACCCUGCGGGAGCUAGCGCUCCAUCCCGGGGUCGUCGUCUAGAUCACCUUCCUGGCUUCCUCUGCUCAUUGCCGCAGCUCGGCGCCGGCGAUGUCCAAGCCGCGCGCCACCGGAGCGGCUGCGUGAGGGUCACUGUCCUCGUCCAGCACACGGUGACCAACGUGCGCGAGCAACACCGGAGAGGUUGUGAUCGAGCUUGAGGUGACAUUGGUGCCAGGAGAAUUCAGCUUCGGUCAUGCUGCCUCUCGCCUGACGGCCCGUCGAAGAAAGUGCAAUAUGAAUGAGAAAAAGAACAAGCAAUUGCAUUGUGAACAGCUACAAAUACAUAUGCAGAAAUUGUAUUACACCAAAGUUUUCUAGACUGGACCUGCCUUAUUUCUGGUGGUGGCAUGUGUGCAUGAAAAUUAUCUCAUGGUAUCCAUGAAAGGAAUUGUUUGUAUAUUCUAGGACUUGUGAUAGUAAGACCUAGUUCACUCGCAUAUAAUUGCUGUUGACUGGUGCAGUUCAAAUCAACUAUCUUAUCGGUGCACAAAUGAUGGUAAAAAAAAAAUCUAUCAGAUUAAAUGAUAAACAUGCACCAUGCCACCAUCAGAUUAAAUCAUAAGAGGAACAAAUGAUAUGUCAAGAAUAACGGAUGCAACUCAUGCACAGCAUACAAUUUCCUGACCUCACAAAGCAUGUCUACACGAUCUCAUGGAGGUGUAUCCUGAUGCGACAAUACGAGUUACAGGGUUAGUAGAUUACUGUGAAAAUAGAUGUUCUACAUGCAAUGCUACUUCUAACUGAAGGGUUAGUACAUCCGGGUCCCUUCUUGAUGAACCUUCUGCUAUAUCCAAAGGUUUCCACCAUGAAGUGCACUCAAUUCACCCUACAUCCCAUGACAGUCUUCAUAAAAAUUACCUGUGAAAAAAAACAAAUAUAAGUAAAUCUUGUAUUGGUUAGGAAUUCGGUUGUAAAAAUAUUAUAAAAAAAUAUCGCAGUUUAAACUUGUCAUCCCUAAAAAAAGCACUUGUCAAAAAUAUCUCCUACAAAAUCAUGAAGUUAAUUUCUGCAUUUUUAUAAACCUAAUAUUGGUUUUGUACAAAUACAGUGGCAGCAAGAGAAUUUCUGAAGGUCAUAUCUUUGCAAAUAAUUAGAAGGCUUCAAAAGAAGCCCUCAAGAUUGGUUUGGAAAUUUUAGUCAGUAAAAGCAAAUCUAUUCAAGCUCAAAAAAGAGCAAGAGGACCCAUCUCAGGAGGAGCAACUGCACACAGCAGUCAGGACACAACCUAGCUAUUUACUAGUGAUCUAGUCUUGUAGCUAUCAAUAAUCACCAUAAUGAGAUCUCAUCAUUGUGUUGUCUCAACUAAUUACAUAGUUAAACAGAAAUAAUUCUUGAAUUAUAUCACUGUUGGCGUAAAUAAUUAAGAAACAUGAACAGAAAUGAAAUGUAUACAAAUUUAUAAUCAACGUUGAUCGGAAAAUAAAUCCAUGUCAUAAGAAACAUCUAGCCAAAUUUCUCGUUGGUUCAAUUUAGCUAGAAUUAAAUUAAUAAGUAGUCAUAAACAAUUAAAAUGGUACUAAUACUAUUUCUGAAAAUAAAAAAAAACUUAAAAUUACUGAGAGAGAGAACAUUGAUUUUAGCCCGGCCCAAACUUGUGGCUUCUGCUAGGUACGUGCGGCCCAUUUGGCGGCGCCCUACCCCACC
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
20.73%
ME_num:
MEP:
77.85%
HE_num:
HEP:
1.22%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
shoot
Tau :
0.62
Avg Expression:
2.58
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hN | -1.06423715642952 | 0.00117725103304684 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hN | -1.010941835545 | 0.00083870399811036 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN | -1.51316175856525 | 8.78074146280909e-06 |
| 4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dA | -1.5492422377503 | 0.000151761827009444 |
| 5 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN | -1.2258066442862 | 0.000584061010958752 |
| 6 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA | -1.58666520456468 | 1.06773137630781e-05 |
| 7 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hA | -1.22670670390262 | 2.42199633037718e-05 |
| 8 | Nipponbare // shoot // Drought_during_3_days;_mock_inoculated--/--Nipponbare // shoot // Drought_during_3_days;Fr13_inoculated | -1.15470918354468 | 0.000205060416351671 |
| 9 | Baldo // leaf // control--/--Baldo // leaf // 100 mM NaCl | 1.2786634657039 | 0.00283892922161172 |
| 10 | Vialone_Nano // root // control--/--Vialone_Nano // root // 100 mM NaCl | 1.60572077216926 | 0.0426932478195092 |
| 11 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA | -1.80299327216581 | 1.20561574490633e-08 |
| 12 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN | -1.7260262553496 | 1.2484811019024e-09 |
| 13 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hA | -1.56904107324491 | 2.68870418421241e-06 |
| 14 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA | -2.07697249378028 | 3.9564516403941e-13 |