Chr:
Chr4
Start:
25115230
End:
25119069
Strand:
-
Ref_name:
LOC107280782
Sequence
(XR_001545493.2):
ACGCAGCGGCGGCACAACGAGAGGGGGCGCUGCUGCGGCGGGGAUGGCGUGGCGCGGCGCGGCGCGGCGCAACCCGGACGCAGCGGCAACAACACACGCUCUCCGUGGGUAGCUGUCUUCUCCGGUGGCCACCUUCUCCCCGUUGCAGGCGUGGUGGGGGACGCCACCGCAUCACACCCCCUCACCAUGGCGCCGUUGAAGCUCUACUGCUGUCGCAAGGAGAAGCAGGAGGACACGGAUGCAGCAACAGCUUCAAGUGUUCUUUUUUUCACUGGUUUCUUGAUUUGUUCUUUCUCCCCGUUGAUCUGUCACCUGGAUUUCCUCCUCCCUUGGUUCUCAAAGAAGAAGAAUUAAAUUAAAAUUAGUGGAGACUAUUAGAGAUGGAUGGAUCGAUCUUUAAUUUUUCUCUGUGCAGUGUGCACAGCACAGGGAAGGAGGGGUCACUGUUGGUCCUUGUCUUCAUUUUUAUGUCCUUAAUUACCCCUCUUGAUGCAUGUAUUACUACUAGUUACUAGUACUAGCUUAGUAGUAGGUGCCUCCUCUUGAGUUGGUAGUUUUCUCCGGCAAUAAUAAGGAUGAAUAUAUAUAUAUGCCAUCAUAAUCUGUUGUCCUGUGAGGAGAAGGAACAUUUACAGUGGUCAUUCCUGAAUUUGUGCUCUGAAGUAGCCCCACAGGAUUUUGAUAUGUAGAUAAAUGUGAUCAGAUGAAUCCGAGUUAUUGCAGUUCUCAUUUUUGGUCGA
Sequence
(XR_003241838.1):
GCAGCGGCGGCACAACGAGAGGGGGCGCUGCUGCGGCGGGGAUGGCGUGGCGCGGCGCGGCGCGGCGCAACCCGGACGCAGCGGCAACAACACACGCUCUCCGUGGGUAGCUGUCUUCUCCGGUGGCCACCUUCUCCCCGCUAGGCGCCGAUCGUUGGGUAACUGCGGGCCUGUGUGGUUCUCCGGCUGAGGCUUAGCUGGGCAAGGAUUGCAUAGUCUCGCUGAGGCAAGAAUUGGAUCCCAGUCACCAGCCAAGCAUUCCAUCCGUUGGCCUUAUAGCAGAACAAUCCGGCAGGCAGGCGGCAGGCAGUCAGGUGGUACAAGCUAGUAGAUGGAGAGCCAGCUCUAUCAUUGGACAUGGGCAGAGUGGCCGCGCAAUGCAAAGCCAAUUUAUACUCCACAGCGAUUUGUGCAGCAUGCAUACGCUGCGCCAGGAAAUGAUGGCCAAACUGCAGGCCCAACCUUACAUGUUGCUGCCUCUCUUGUGAUCUUGUCUUCCCCCAACUUUUGCCCUGAACUAUGGCGCGUCUCCUGCGUACAGCUAUAUCUUGCAUAGUCGCAUAGAGUUUGUGAUGCGCAUUGUUGCCGUUGACCGUCCUGUUCCUAGUUUGAGGUUUAAAACCUACAGAUAGCACACAGCACCUUUGUAAUUUUUUCCUACUCUAUUCAACGAAUCAUCGCUCGGUCU
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
0.61%
ME_num:
MEP:
50.41%
HE_num:
HEP:
48.78%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
shoot_apical_meristem
Tau :
0.73
Avg Expression:
25.28
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA | -1.35744367274131 | 9.74630703702862e-09 |
| 2 | Nipponbare // leaf // "wild_type,control,2"--/--Nipponbare // leaf // "wild_type,drought,2" | -1.10997604174957 | 0.0362643266413285 |
| 3 | Nipponbare // leaf // control--/--Nipponbare // leaf // drought | -1.11007504542227 | 0.0368261052419282 |
| 4 | Nipponbare // leaf // "wild_type,control,1"--/--Nipponbare // leaf // "wild_type,drought,1" | -1.11018314839777 | 0.0363470563095471 |
| 5 | 9L136 // leaf // control--/--9L136 // leaf // salt | -1.35350458663461 | 0.00234474596059973 |
| 6 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA | -1.53891851852335 | 8.48573816447446e-12 |