Chr:
Chr4
Start:
27175326
End:
27177493
Strand:
-
Ref_name:
LOC107280775
Sequence
(XR_001545451.2):
UCCCCUUUUCUCCACAUAUGAGCCGAGCUCCUCGAGCUCUCUCUCUCCUGUUAUGUCUAGCCACCACCGGCCACCGUCGAUAUCCCUUACCGGAGCGUUGUUGGCCAAGCCCUUGCGCCAUCGGGUUUGCCUAGACGAGGCGAAUCCAUUUCACCCCUUUCCCCUUUCCCUUCCCCUUUGAAACAAACCAUCACAGCCACUUCCUCUUGUUGCCGGAGCAAGCUAUUGCCGUCGCCGUUCCGGUCUCCUCCCUAAGACCCUAACCCUCUCUACCGGAAACCACCCUCCCCGGGUGCGCGUCGCUCGGGAACAUGUUUUGCCGCCGACGUCGCAGCCUCUCAACCACCAGAGUACCGGCGCCCCUCCUCUCCCUCCUCUCAACUCACUCGGCAACAGAAAAGAGGAAGAGAACGGGAGGAAGAAGAAGGAAGAAGAAAGAGAGAAGAAAAGGAAAAGGAAAACUGACAGUAGAGUCUAUUUUGGAUGGCAGCCUGUGAUAUUUCAAGGAUCGGAUAAUCAGGUUGCCUAUCUUGGAUUUAUUUGCGUUGGAGCAAGGCAAGUUAUUAUUCCUCCCCUUUGAGCAUAAUAAUCCUAUAUUCUAUAUCUCCGGUAUCUUAUGCAUUAGCCAUACAUGAUUUCGAAUGCAUAACCUGAAUAUAUAGCAAACCAGAUAUAUGCUAGAUUUUGCUUAGCCAUGCCUAGUUAGAUUGCAUAAAAUAUAAUAAACUUAGAUUGGAACAAUACGGUAGAAAUGGUUGAUUUCCGGGUGGCUAGUACUGUUCCAACCGACAUAAAAUUGCCAAGUACAUGUGAAGAACAUACGAGUACGACCGCAAUUCUCGUAUGGGCAUAGACCUAGCUGAUUAAGUUAUCUAGAAAAGGUGGUACCUCUGUAUAGUGGUUCUUCUUAAGUCCUCGCGCAGGAGGCAAACUUACGCCGAGCAGGGCGAUUGUAAUAUUUACCGAGGUGCAUGUAAAUAUUUGAGAUAAAUUGUGAUAUCACAAACUGUGUGUGUAUUGUGAAUACCUUGGUAUAAACAUGGUUGAAUCAAA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
19.11%
ME_num:
MEP:
40.45%
HE_num:
HEP:
40.24%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
embryo
Tau :
0.83
Avg Expression:
33.55
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hN | -1.5761834310184 | 6.10174309141638e-07 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN | -7.46582927509523 | 5.16201382416219e-17 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN | -6.71544058966649 | 9.69526371836722e-14 |
| 4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA | -5.87662079598802 | 1.12392413067864e-18 |
| 5 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 1hA | 1.09033985046661 | 6.82088118149531e-10 |
| 6 | Vialone_Nano // leaf // control--/--Vialone_Nano // leaf // 100 mM NaCl | 2.24295279791085 | 1.42388559916881e-08 |
| 7 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 3hN | 2.26245882438657 | 3.01887136248422e-45 |
| 8 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hA | -2.33918173351321 | 1.53438036439485e-18 |
| 9 | Nipponbare // leaf // H2O_control--/--Nipponbare // leaf // Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 4.34921127848047 | 1.66540797255698e-46 |
| 10 | Nipponbare // shoot // No_DIS;Fr13_inoculated--/--Nipponbare // shoot // Drought_during_3_days;Fr13_inoculated | 1.12562658208381 | 0.00178946373310235 |
| 11 | Nipponbare // shoot // Drought_during_3_days;_mock_inoculated--/--Nipponbare // shoot // Drought_during_3_days;Fr13_inoculated | 1.57505631560233 | 0.00337061406853072 |
| 12 | Nipponbare // shoot // "Control,22C for 10 min, then 30C for 1h50 min"--/--Nipponbare // shoot // "Heat,42C for 10 min, then 30C for 1h50 min" | 4.48569084698573 | 1.19691683923901e-266 |
| 13 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_BLS256 | 3.33975299312332 | 5.29188458796023e-21 |
| 14 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_CFBP2286 | 2.36626641932111 | 4.64547395532995e-05 |
| 15 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_BLS279 | 2.79573269376488 | 1.97358652993751e-12 |
| 16 | WD20342 // leaf // none (control)--/--WD20342 // leaf // 0.5% Na2CO3 solution for 36h | -1.8807432557882 | 0.0491596946942463 |
| 17 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 3hA | 3.90347534746226 | 2.66510883659457e-134 |
| 18 | Nipponbare // shoot // "Control, 22C for 10 min, then 30C for 50 min"--/--Nipponbare // shoot // "Heat, 42C for 10 min, then 30C for 50 min" | 3.25383281334951 | 2.19763003219609e-124 |
| 19 | BR-IRGA_409 // spikelet // control condition (29C) for 7 hrs--/--BR-IRGA_409 // spikelet // high temperature treatment (38C) for 7 hrs | -2.59026752054624 | 2.74189929137642e-05 |
| 20 | 9311 // leaf // control--/--9311 // leaf // salt | 1.72072299960103 | 7.84652074175437e-05 |
| 21 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA | -6.38273421648156 | 2.17059062413187e-22 |
| 22 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN | -2.51457196800548 | 1.06410622857142e-11 |
| 23 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_L8 | 3.50635428765806 | 6.88687081753204e-06 |
| 24 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_B8_12 | 3.15097774366619 | 1.13348806284329e-15 |
| 25 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_BXOR1 | 2.72727023269085 | 0.00923427926534703 |
| 26 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_RS105 | 2.87528678182053 | 3.71586466336242e-11 |
| 27 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_CFBP7341 | 3.53865221843914 | 0.000468136084279947 |
| 28 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_CFBP7331 | 3.79269882490039 | 0.00442719108403123 |
| 29 | Nipponbare // leaf // "wild_type,control,2"--/--Nipponbare // leaf // "wild_type,drought,2" | 4.59555438879187 | 2.66991469584006e-19 |
| 30 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_CFBP7342 | 3.22968148869842 | 9.87491357735096e-11 |
| 31 | Nipponbare // leaf // control--/--Nipponbare // leaf // drought | 4.5954552722142 | 2.42828710714852e-19 |
| 32 | Nipponbare // leaf // "wild_type,control,1"--/--Nipponbare // leaf // "wild_type,drought,1" | 4.59538133103083 | 2.74573524482118e-19 |
| 33 | Nipponbare // leaf // Non-inoculated--/--Nipponbare // leaf // Inoculated with Pyricularia oryzae | 2.94393015471356 | 1.06897619695087e-126 |
| 34 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hA | -3.71369164686126 | 7.708072629322e-20 |
| 35 | 9L136 // leaf // control--/--9L136 // leaf // salt | 2.06223817371042 | 3.41474084260655e-09 |
| 36 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA | -4.96153660838993 | 1.23269247912581e-37 |