Chr:
Chr4
Start:
30703536
End:
30713038
Strand:
+
Ref_name:
LOC107280762
Sequence
(XR_001545392.2):
UGAAGAUUUCUGGUUUUGUGGUUAAGGGAUCUCAAAAAAUCUCGCUGUUAAGUUGAGGGACCUCCGGUGAACUUAUUUCAAAUAAUAUUUCUUUAUGCCUUUAUGGGCCUUUACGCAAAAUUGGCAGAGCCCAAAAUCCUAAAAGGCCUUUUUUGACAGGCUCUGACAAUGCGUGAACAGUAUCCUCUGCCUUGCAGAGAAAACCGUAGAGCGUGCCGUCUAGUCAGUUUUAGCCAUCGGAUCAUCCUAUCAACGGCCAGGAUGGAGAAGGAAUCCCUGUCUCUCUCCUCCAUUAAUUACACGCACGUCUCGAGCCCCCCGGCGGCCCGGCCACUGUACCCCGCGCGCCAUAUCGCCACCGCCACCGCCCACCCGAAACCUCCCGCUCCUCUCGAACCUUUCCGAGGCGGCGAAACCCCCACUCCCCGCCGCGCUGCGCCGCGCCGCCGCGCCCUCUCCUCCCGGAUCUCGCCGCCACGCGGCUGCGGGGUGGUCGGGGGUUCAAGGCGUACGGGUGGCGCGGCUAAAUCCGCGGCGCCGCAUUUGGUUGGGGGGAUAUGCCCAAUUCUGUAUGCGGCCGCCGGAUUUGAGCGGGCGGAAGCGGUGGGCGGGCGAGCCGGCGAACCACUCCUCGAGCGGGGCGCCGACGCAGGAGAAGGAGCAGGUGGAUGGGCGGGCGCGGUGGAUUCUCCAGGUUCAGACUGAGCAUGCUCUCAGCUUUCAAGGAACGUGGAAAGCAGACUGUUGAGCAGGGAGUAUAUAUCAUGUGUUACCUUUUUUCUUUGGGGUGUGUGUGUGAGUACAGUUCAACGAGCUUGCUUCACCUUCGUCUGGUUGCGUGUGCGCGCGCACACGCUAUGUCCACUAUGUUUGCAGGUAACAAACACCUUUGGCAAUGUGGUGUUCGCAGGUAACAUAUAUUUUCCCCUCGCAAGCAAAAUUUUUAAAAGAAGCUAAUGGCUAGUUUUCAGCACUAGUAUCAGGUUUUUCUUUCUGCAUGCGGAUUGCUUUUUGGCAAUUUUUUUAAGAACUGAGCCUUUUAGCAAUUCUCGCCCUGCUUUCGGCAACCAUUGUCAAAGUAACAAUUUUGUAACUUGUACCCCUGUUUAUCUUAAUGAAAUUUGGUCGGCCUUGCUGGCCGACCUGGCAAAAAAAUAUAUUUCCCCCUCCAGUUGUUAAAAAUCUUAAGAUACUAGCAGCAUGUUCUUUUGAAUUGUAUUUAUAGGUUUUUAUUUUAUUUUUCGUUGCAUACAAGGCUAGUUCUCUAUACAUAUUAGAAAUGGUCAGUUCGUUUCCUGCAAUGUUUUUGUUUUAUGGUGGAAUAUUUGAUGGACAGGAUUGGCCUAUCUCACUUCCUAUCUCAAAGCGAAGAAGCACAAUUCCUGCAUAUUCUCUAAAAACAGUAAGAAGAUAGGAUAGGUGGGGGGUGACCACACAAAAACAACCCAGUAAUUAGCUAGAGCUAAGCUGCUCCCAAAAAAAAAAAUUGUGCCAUCCUCUUAUUAUUCCGUAUGUGCAUUAGAAUUUAUUAUUUGACACAUACUAAUUCCUUUUGUCAUUGUCAUAUUGUCAAUGAAACAUUUAAACACCACAUUAAUGUCUCCCCAUCCUAAGAUUUUGUUUUCAGUUGCAUUGUCAUUUAGAUAUAAUCACUCCUAUGGGUUUUUGCAGUCCUGUUAGAAGCUCUUCUUGCUAGUUUAUUCUGCUUGACUGCUUGUAAGUUGAUUUGUUGAAUGCUUCAUUGAAGAUUCUUUCUGAAAAUGUAAUCAUAACUUAAUUGUUCCAUCUUCGCCGCAAAAAAGAAGAAGAAGAAAACAUUGGAUUGUUCCAUCUAUUUUGAUUGCGUUAUGACUUUCUAGGCAACUACAAUAUAUAUAUUCUUCAGUAAUUUUGCAAUAUAGUACAAAAGAUAUAGCUAUAUAUAAGUUUACUUUACAAGGCAAAAUUUGUGUACACUUUCAAUUUGAAUGCAGUUUUGUGUCCUCAAUGUAAAUUUCCAAUCUAUUAUAAUAAAAAUGUGCUUGAUGCUUUUAAAAAGAAAGUUUCUGUUUCAUGGGAAUUCAUGUACCCAAUAUCGAAUGCCCUGUGUUGCAAUGAUUUGAAAAUUGCUACUAAAAUCAUUACCGUAGUAUACAAAGUUCUACAAACCUGCAAUUCAAUAUCAAGUUUGAUCUAGAAGUAAAGGAAAAAAGAAGACAAGAACCAAUGUGAAUGGUUCAUCAUGUCCCAAGUACAACUUGCCUUGUUUGGAUCUUGACGUGUGGGAUGAAUCUGGCAUUCAUUUUCCUUUUUGCAUGUCUGUACAACUUUAUGUAUACUUCACUCAUGAUUAUUGAAUACUGCAAAUGUUGGAUUUCACUAUUUCUGCAACGGGGAUGUAGCCACAUGUGCAGGGCACAGAAAUGUUUAGUUUUGGUUGUUAUUGCGACCUAUGUUCUCCAAUACAUGUUGUUUCCUAUUAUGCCAAGUUGACUGGGUUAAUUAGUGUCAACUCUGAAUACAGAAAGGUUGUUUUGUUGCUUCAUCAAUUUUGUGAAGCUCAUGUACAUACUUCGGUAAUUCAACAAUCCUAUGUAACUGAGCCUAGCUUGGUGGAAGGUCAGCAUCUCCACCCUCCACAACACCUGGGUUUGACCUCGCUUUGAGCUUAGGUUCCUUUUUUCUUCUUAGUGGAGAAAAUCCUAAUUUCUCUUAUGUAUUCUUUCUUGCAUUGAGAUUCCUGAAUACCUGUUGAUAGUUUUAUUUAUAGUUGGCAAAUUUGACUGAAUCAUCCAGUUGAUCCCAGAUUAUUCACAUGUUUCAUAUACAGCACAAGUUCGUUCCAUAUUGAGAAAGGUUUGCAAGACUGUGAACUAGAUAUAUGAGCCAUCUUUCAGUUAUUAUUAUUAAAUUGGAUGCCAACAUUGCGUCAAAAAAAAAAAAAAUGGAUGCCAACAGAAUAUGAGGAACUGGAAGGCACCAGCCCUCAGUUUUCCUUCAACAGGCAUGCAAGGUACAGAACCUGAGGUGGAGAAUGAAAUUUCAGGAUUCAAACUCCAGGAAUUUAAUGAUGAAUUUUAGGUGGAUGGAAUCUUAUAUGGUCAACUUUGUAAAAGAAAGGUUCCUUUGUUUUGAGGCAUCUGCUUAAGAUGUUUAAAUUCAUGCUUUAUGCCUUUGUUUUCUUUUCCUUUUUCUGGAGAGACACAAUGGCUAUUGUUUUCAAUAUAACCUUCUUUCAGAGCUCGUUAUCAUCGCCUAAUUAGCAGAAUCUUAUGCAAUAAAUAAUGUACAUAUAACAACGUAUAUAGUAGUGUUGUCGUGUAUAUAAUUAGUCUUCAGCAGUAGCUUUUUUUUUUGUUGAGAUAAUCUUCAGCAGUAGCUGUAGUUAACAUCAUUCUUAAAAAACAUCAUUCAGUGGAAGCAAAAGUCUUCUAACAUAUUUGCCUUUAGCAGCAAUUGGCAGUAUUGCUUUCCGUUUUAUAUAUAUGACAUCUUGCAGCAUCGGAUAUGAUGUGGUUUAGCUGUCGUGGCAUAUACAAUCAUCACUGCAGUAGACUUGUUUGUAAGGUUGUUAGGAUUCCAAUCUUAGCUGGAGCAUUGUGUUGUCAAAUGGUGAGAUCUCCCCUUAUUAUUCGCUAUUCACAUAUAUGGCACAUGAGAACAUCCUUAGACUUAGUAUAUGUAUGGGCUGCGAAAUAAAAUAAAAAAAUGGUCUGUGUUACUAUAAAUUGCAUGCAUUGUUCUGUAGUUCCAUGCAAGGGCAAAAAAAGGUACUAUUAUGUACGAUUACAUUCUAGUAAGACUGGAAAAGGUGUUACUGGAGAUCUUCCUUUUUUUAGCAAAGGAAUACUAGAGAUCUGCCUUAUACGUUAGAACCUAACACACUUGACUCACCUUGGUAAUGCAUUUUGAUGAUGAUAUUUUUUCAGCAAAAAUGCCAAAAGGGGUAGGAGCUCUAACUAUUGCAUUGAAGGAGGUAAGAAAUGGAAUUUUAAUAAGCACAAAACAAGGGGAUAUUACAGUGCUACGUGUCCUCCAAACAAGCUCCGAAGCACAUCAUGUAACGCUUUACUAAUAAUAGAUUGUUCAACCACAUGGAGUUUAUUUCUGUUUGCAUCAUGUGAAGUUUAAUGUUACCAUUUGCAUCCUAUGAUGCAAUAGCCUCCAAACAAGUUCUGUCCGGUGUGCAUCAUCAUGUAAAUUGUAACUGUAUGUGCUUGUUGUUACCAGGGAGCUGUUUUUGCUGCUUGUGCAGGACAAAUUCUCCAGGCUUUCCCUUUUUGAUAAUCAGGAUCACGAACUGGUGGCAAUUCCUUGAAGGGUUGAAAAGCUAAAUCACAUCUGCAAGUGCAAGUUUGCCUCCUGAUUUUGGACAGCAUAUCUACAAUUGCAGGUGGAAAUGGAAUUCAAUGUGUCACAGGAAGGCAUUAGUUUGAGAUUGCUCUCAAGAAGAAUACUAAUGAGAGCAACAGUGUUUUAUGGAGCUUCAGUAGAAGACAGUGUGAAGUACCAAUUGAUAAGUCUGACAUGAAAGCGAGACUUGGAGAGCAUUUUGACCUAACUUAGAGCUAAUUCUUUACUUAUUUCUUUCAUUCCAAAGAACUUUAAUAUUGAACCACCACCAUCUUUUUCUUGAAAAUAAUUGCUGUUAAUUAACAUAAAAAAAUCUUUGGAUGCCGAUGGGGGACCCACCCUGUCCAUGAGAAGUGCACGAUGCGCUGCUCUAAAAUAUCGUAGAAAUUUCGCUAUAGAGUAUGUUUGGGUUAAUGGUCGCGGUUUUUGUUUUCUUUUGGUGUUCCCUUGUACUAACCCCGGACUUAACGGGCUUGUAUGAGUCUUCUUAGACUCUUUCCUUAUCCUAAAUAUAAUGAAGCCCAACUAUCCUGCUUGUUUGAGAAACAAAAUCCUAGAAAUUCCUGAUGCUGCACAUACAUGUUAUAAACCCCAUGUAUUAACAUGCUUUAUAUGCUUAUAAUUCGUCUAUUUAUGUAUUAUACACAAGAUUUGUCAUCAAUAUGGAUGCAGUUUACUUUUAGUUGGUGUUUUUGGUGAAAACUUUUUUUCGGUUUAGAACUAAUCUGAAUUAUCUACAUCUUGGUCUGGUUUCAUCUAUUUAACAGACAAGAUAUAUUCUAAAAAAUAUGACUGCAAUGCUAAUUUCAUUUGAUACUUGGAUCAGCAUAAUCUACAUUUUGGACUUCUUUUUUUGACGAAAAUACUGUCAAUUUGGACUUGCUAGCUAGAUGUAUAUUAUAUAUCUGAACAGUUCCUGCACUGAUCAAGUUAGUACCAGUGGCAAUAACCACUCACUGAUAUUCUUAUUGGGGGAUUUCCUUGUGGUUAUUAGUGUUGUAUACUUGCUUAAACAUAUUGUAGGCUGAAAUUGUAAGGUCAAUACUUGCUAUCAUUGUUGUUAUUUAUCAGGUAGAAGUUGACUACUUGUGGUCUUUCCAUCUGAAGUUUUUGUUUUACUCAUAGUACAUGAAAAAUUUUAAAUUUGCUUAAUCUUCGCUUAUGCUAGUUUAUCAUGAAAUGAAUCAAGAUGUUCCAUAAGUUGUAACAUGUCUUGCUGGUGGUCCAUGAUUUGUAGAUUUCUGACAUUGAAAGCUUAAUUCUUUUAUUUUUGUGGUUAGUUGACAAUAGCAUGUGAUAUACUCACCUUAUUCUGCUGCAUUAUCACAUGAUUUGUUAACACACCAUUCUACUUCAGAUUUAUGUUGCAAUAACGUUGGAUAAUCUCAGAACAAUUAAUGUAACCUAUUUGUGUUGCUGCCAAUCAGCCUAUCCAGUCAAGCAACCGUGCACUUGCUGACCUCCCGAGCCUUCUUCAGAAAUCUCCUUCACCAUCUGUAGCGUUUGUUAAUUUUUUCCUGGCUAAAAAGGUAAUUACUACUGCACCUUAGCCUCUUUUCAGGUUGUGAAGCACACCUCCCAACAUGACAUCAACUAGGAAUAAAAAUUGUACUGAUUAAUAGAGGGGAAGCAUGGAGAGGUAAUGGAAUUGCAUUCCGCACUUCUCACUAAACUUGAGCAGCUUUAUUUGCAAAGCUGCAGGAUUGUGUAAUUGUUGCAGAAAAAAGUGCACCAGCAACGUUUACCAUUUGUUCGAUGCAUAUGGUUCAUUACUUCUAUAUAUGUCCGAAAGUGCCAUGUCUUGGAUCAUGUCUUACAUUUUAGCUGCCUACCUUUAACAUUAUACAACUUAUCUGCAUAGUCUGAUAAAACAUGUGCCUGCAUCUAUACACCAGUUAACUUUUUUGGGGGGUUGGGGACUUUGGGGGAGGGGGGGGGGGGGUUAAAGAAAACUUUAUGUUCACUGUCAAGUCUGAUACUGUCACUGUGUCACACACAUUGCAGAAAAGUUUUAACUCAAUUAAUAUCAUCAUUAUUUCCUACUGCAACAAGAGUCAAUGGCAGAUACUUGCCCCCUCAUUUAUCUCUUGAGAAGGGGUAUUGAUUAUCAUGAUCCAUCUAAUUAUGUUGAGCAUUAUCCAUUGAUACCCAUUGGGAAAAUUAACUAGACUACUAGCAUUAGCUAGUGUGUGAAAGAUCUCUACUCAAUGCUAUUGUGAACAUCUCUCUUUUAGGCUUUUAAUUAGCCAUCUAACCUGUUAGUAAUGAUUAAGUACAUCGCUUUAUUCAGAGGAAAUGAGGCAGGACCACCGACAUUGAUCAGUUCUCUUUUUUAGGGGAUACAACACUGAUCAGUUCUGGCACUUCAAUUCAUGGCUACAUCAAUCUGCGAUGUACCUUUCUGCUUCUGUCGUACGUGUUUAACAUUUUCUUUUACAUCCACAAUCUAUGUGCUAUGACACCCUAAGGACUACUGUGGUAAUCAGGAGCCUCGCGAGGAAUCUUUCUUGUGCGCAGUGAUGGUCAUGGUUUCUCUUGGCUUUUCAUAUGAUCAUAAAGCAAUACAAGACAUAUAUCUUCAUUUUCUUCAAAAACCAAGGAUUAGCAUAUGAUAAUGGUUAGUAAAUGAAGGAACAGCAAGAUGUUGAACAUGUAAUGUAUGCACUAAUGCACAUGCAGAGCUGAAGAGACAUGAUUCUGAGGUAAUAAGUCAGUCUUUAAGCAUUGCAUACUUACUCAUUCGUAUGUAUCUUGGUGGAAAUCGUCGGCACAAACAAGCUACGGUACAGAUGGCCCUCGAGGAUGCUCAAGAGCCAAACGCUAGAAGAAGAGAGCUAGGUGUAGCCAAGGACAGACUUGCCGGCUAACUCCAAGGCGCUUCAGCAAAGCUGAGAUUCCCCCAAUACCAGGAGCCGGCAAGUCAUCCUUGGCUGCAUCCCGUUCUCCUCCUCACAGUGCAUGGCAACCCAGCAGAAGCUGCCUCAGUGGUUCUACUGCAUACUGAACAGUACAGGUACUCUUCCUACUUCUCUUCUUCCUUCCCCUACCAUGGCUGCUUUUCUAUCAUGUGGUUUGAUCUGCAAGCGUGCAUUGCAAUCGGGAGGUAUGGCCUGCAUUUAUAGGCACAGGCACAGGCAAGUUGGGCUUGGAAUCAUAUGGCGAUCACUGUUCAAUGGAUUCUUUAUUAUAAAUAUUUCAUCAAUCAUAGAGUUUGCCAUUUUAGGGAUGUGAUGAUGACUCGCGAUUGGUUGGCCUGAUUUCCAUUUUUAAAUUGAUAUAGUGGGCCCUGAGGAUGUGGCAUCCUCUCGAUAUGGGCUGUUAGGCUGGCAUGAUCCCCUCGGGCUGUUACUGGGGAGCCUCAUUGGUUGGUUGGGACUGGGGAUUGAGCUGUUCGCCUGUUCCUAUUGGCUGCUCGCACGUGAGCAUGCCUUGUGUGAUCUCGAUCUAGUGAGUUUUUUUUGUAACAACACCUCAACAGUCCUCUUUGUACCCCAGUGUUGCCAGCAAAAGCCAAGUUAAUUACCUCUAGAUA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
16.26%
ME_num:
MEP:
67.48%
HE_num:
HEP:
16.06%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
coleoptile
Tau :
0.77
Avg Expression:
11.17
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hN | 1.17919703742501 | 1.08241423509093e-39 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN | 1.5879496987049 | 1.81683824099879e-83 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN | 1.40518894936585 | 1.24636100629343e-44 |
| 4 | Vialone_Nano // leaf // control--/--Vialone_Nano // leaf // 100 mM NaCl | -1.05264176713867 | 0.00102024059799344 |
| 5 | Nipponbare // shoot // Drought_during_3_days;_mock_inoculated--/--Nipponbare // shoot // Drought_during_3_days;Fr13_inoculated | -1.13766619151136 | 9.6305728740672e-06 |
| 6 | Nipponbare // root // "mock,14_days"--/--Nipponbare // root // "auxin(50CM_2,4_D),14_days" | 2.96195436802007 | 5.7566019454137e-06 |
| 7 | WD20342 // leaf // none (control)--/--WD20342 // leaf // 0.5% Na2CO3 solution for 36h | 1.87436469624349 | 0.0249182319671868 |
| 8 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN | 1.41710655501646 | 1.0992975466372e-80 |
| 9 | 9L136 // leaf // control--/--9L136 // leaf // salt | 1.47760213673205 | 4.11963676018973e-08 |