Chr:
Chr4
Start:
31079361
End:
31079968
Strand:
+
Ref_name:
LOC107280752
Sequence
(XR_001545367.2):
AACCUGCAUGGCCAAAAAUUCAUGUGGUUAUUGCAAGAGGGCCUAUCUGGUUUUGUGAAGCAUUCAUUUAGUUGGCAAUCAAUGUGCAAAUGGAGUUAAUUCUGAGUUUAGUGGGAAAAGUUUCCCCUGAAGUGCAGAUUAUCAGACAUAUCCAUUGAAUAGGAAGGCCUAUGAGCUUCAAGUGACUGCUGUUACCUGAGAUACUACCUUAUGUCGAAUUGAUUCAGCUACUGAACCCUCCUCUGCCCUCUCGUCUCCAGCAUGCUUGUGUACGUUGAUGUUGUCAACUGGGCGUGCCUUCCUGAAUUGAGACCGGUGAUAGUAUCCAGCAGCCAAUGAGUCCACCACCAUUGUGGACACUGCAGCAGACAUUGAAACAAGGCCCGC
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
49.19%
ME_num:
MEP:
47.76%
HE_num:
HEP:
2.85%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
carpel
Tau :
0.87
Avg Expression:
6.61
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hN | -1.95829678018879 | 0.0086149360371349 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hN | -1.94995647502837 | 0.00585860156890887 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN | -1.67502330025356 | 0.0238345057839608 |
| 4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN | -2.46932668903451 | 0.00578275528658545 |
| 5 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA | -1.73413872605818 | 0.0255076723889787 |
| 6 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hA | -2.30617898556895 | 0.00184346236869763 |
| 7 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA | -1.62017319229743 | 0.0138791416766343 |
| 8 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN | -2.03880000672393 | 0.00282611433366652 |
| 9 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hA | -2.05442910144533 | 0.00957291403781326 |
| 10 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA | -1.72603535768979 | 0.00314870652367283 |