RiceNCexp
Rice Non-coding RNA Co-Expression Atlas

OSA-LNC107280740

Function Link

Tissue-specific Expression analysis
Differential Expression analysis
Co-Expression Curve
Network analysis

Basic Info

Chr:

Chr4

Start:

5894775

End:

5895034

Strand:

-

Ref_name:

LOC107280740

Sequence
(XR_001545326.1):

AAAACCUUGUGUUGGCUAGAAAUUCAUUUUCUAGAACUGUAUACAACAUAAAUACUUUGUCAAAUCUUGUUUAUGUUGGAAGGGUACAAAUAACUGUGGAUGGUGAUGGCCGUCAUAUUGUAUACCCAAGGAAUGCACCAACGGCAGAAGACAUAGCUAGUGGAAAGGU

Expression Capacity

HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.

HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.


NE_num:

1

NEP:

0.2%

LE_num:

441

LEP:

89.63%

ME_num:

39

MEP:

7.93%

HE_num:

11

HEP:

2.24%

Type:

HCR (High-Capacity ncRNA)

Tissue Specific Expression

cutoff: tau > 0.9 and Average expression in the tissue > 10


Tissue :

embryo

Tau :

0.91

Avg Expression:

1.36

Tip: OSA-LNC107280740 is not a tissue-specific expression ncRNA.

Differential Expression

cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01


Num. Condition log2(FoldChange) Padj
Tip: OSA-LNC107280740 is not a differential expression ncRNA.