Chr:
Chr4
Start:
33452426
End:
33454098
Strand:
-
Ref_name:
LOC107280717
Sequence
(XR_001545272.2):
UUGUGCUUGAAUGGGGAUUCCAUUAAUCCAAAUCGAUCAGUUGUGAAGUUUACAUUGAUCUUACUGUACACGGUUCAGAUUAAUUUUGUUGACAGGGGAUCUCAGUUAGUUCAGGAUGCAGGUCGUUUGCAGUGUUGCAUGUGCAGUACUGAUCAUUGACACGUGGACCUCAUAGCCCCUCGGAUCCACGUAUCAAUGAGCAGUACUGCAUGUACUGCAGGGGAUCUCAAUUAGUUCGGUUGGCAUUGCUAAGGCACGGAGCACUGUUACGGGGCUUGCAGCUGCAAGCUGCGCAGCGUCAUCAAGAUGGAGCCUCACCUAGUUCCUCCUCCUCAUGCAACUGCAGCUGUGUAGUAUCACGAAAAGGGAGACAUGGCGAUGAGGAAGAGCCAACCCUGAGAAAACUCAGGAGGCAAAGUGGAAUUGCUCCUCUGUAUCCUUUCAAAGAUUCAGAGUUUCAGUUAGCUCUUCUCUCUUUUUAGUUUUUCUUUUCCCUUCAAAGUCUUCAAAAAGACCCAAGAGGUGAAAGGUCCGUUCUUGUUUCCCUUCUGUCCUUUGGAUGGUAGCUAAUGAACAUGGAUGGACAGGUCAAUCUCACCGUCCCUUGUUAGAAAUGGACGCCAUUAAUUAGUUUGAAGCCUUGAAGAUUCAGGUCAUCAGGUCUCUGGCAAAUUGGCAACCUCGAACAAGCUUCAUGACAUCUUCCUAAGUUGAGUGAUUGGACAGAAAGUUUGUGCACUACUACUAAAAUUCUUGCUUCCUUUUGUUGGAUUGCCAAUUUGCCAUUUCCCCCAGAAUCACAUUCUGCAGUUUCUGACGGUUCAUCAUGGUUGCAAUGAACCUAUCCGUGUAAUUCUUCUCUUCUUUUUUUUUUGUGAUGUUACAUGAGCGACUUUAAUGGUGGAAUUUAUUUGUUUGA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
90.45%
ME_num:
MEP:
9.15%
HE_num:
HEP:
0.2%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
shoot
Tau :
0.94
Avg Expression:
0.90
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dA | 5.93336319165227 | 1.87672604528933e-05 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN | 4.70385781529869 | 0.00143728365630843 |